| Sequence ID | dm3.chr3R |
|---|---|
| Location | 574,034 – 574,127 |
| Length | 93 |
| Max. P | 0.786371 |
| Location | 574,034 – 574,127 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 72.16 |
| Shannon entropy | 0.53800 |
| G+C content | 0.45816 |
| Mean single sequence MFE | -22.31 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.94 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 574034 93 + 27905053 ---AUAGAAGGAAGAAUAAGUAACUUUUGAUUUUCCCUU-GGCAUACCCGAUUCCCUCGUCCGUCGUCCGCCUUUAUGGUAAUUUUCCCGGACAAGG ---...(((((((((.((((.....)))).)))))).((-((.....)))))))(((.(((((......(((.....)))........))))).))) ( -19.94, z-score = -0.22, R) >droAna3.scaffold_13340 22795368 97 + 23697760 GCAGAGUUCGAAGAUAUAUGCGUUUUAUGCAUUUUUAUUUUCCAUACCAGAUUCGCAGCGCUGUGGUCCAACUGGAUGGCUAUUCUACCGGCCGGGC .....(((((((((((.((((((...))))))...)))))))....((((..(((((....))))).....))))..((((........)))))))) ( -24.60, z-score = -0.11, R) >droEre2.scaffold_4770 884451 96 + 17746568 AGAAUAAAGAAAAGUGCAAGUAAUUUUUGAUUUUCCCUA-GGCAUACCAGAUUCCCUCGUCCGUCAUCCGCCUCUAUGGUAAUUUUCCCAGUCGAGG .((((...(((((...((((.....)))).)))))....-((....))..))))(((((.(........(((.....)))..........).))))) ( -14.67, z-score = 0.23, R) >droYak2.chr3R 889675 85 + 28832112 ------------AGAAUAAGUAAAUUUUCAUUUUUCCUUUGGCAUACCAGAUUCCCUCGUCCGCCGUUCACCUCUAUGGGAAUUUUGUCGGAUGAGG ------------.........................(((((....)))))...((((((((((.((((.((.....))))))...).))))))))) ( -22.10, z-score = -1.83, R) >droSec1.super_6 681264 93 + 4358794 ---AUAGGAGGAAGAAUAAGUAACUUUUGAUUUUCCCUU-GGCAUACCCGAUUCCCUCGUCCGUCGUCCGCCUGUAUGGUAAUUUUCCCGGACGAGG ---.((((.((((((.((((.....)))).)))))))))-).............(((((((((......(((.....)))........))))))))) ( -27.04, z-score = -1.53, R) >droSim1.chr3R 622251 88 + 27517382 --------AGGAAGAAUAAGUAACUUUUGAUUUUCCCUU-GGCAUACCCGAUUCCCUCGUCCGUCGUCCGCCUGUAUGGUAAUUUUCCCGGACGAGG --------.((((((.((((.....)))).)))))).((-((.....))))...(((((((((......(((.....)))........))))))))) ( -25.54, z-score = -2.01, R) >consensus ___AUA__AGGAAGAAUAAGUAACUUUUGAUUUUCCCUU_GGCAUACCAGAUUCCCUCGUCCGUCGUCCGCCUGUAUGGUAAUUUUCCCGGACGAGG .........((((((.((((.....)))).))))))..................(((((((((......(((.....)))........))))))))) (-14.13 = -14.94 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:53 2011