| Sequence ID | dm3.chr3R |
|---|---|
| Location | 567,019 – 567,109 |
| Length | 90 |
| Max. P | 0.683541 |
| Location | 567,019 – 567,109 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.88 |
| Shannon entropy | 0.29845 |
| G+C content | 0.32503 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -10.87 |
| Energy contribution | -12.63 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 567019 90 - 27905053 UGCUUUGAUUUUAUUUGUUU-----------ACUGAUAUUUGUCGAACGAAUAUUAAACUGUAUCCCUUGC------------UGAUUAGAGGGUAUCAGAUAGUCUAUACUG ......((((.(((((((((-----------((........)).))))))))).....(((...(((((..------------......)))))...)))..))))....... ( -17.70, z-score = -1.47, R) >droSim1.chr3R 614877 113 - 27517382 UGCUUUGAUUUUAUUUGUUUAAAUCAUGUUAAAUGUUAUUUGUGAAACUAAUUUUAAACUGUAUCCCUUGCUCUUCAGCUUGCUGAAUAAGGGGUAUCUGAUCGUCUAUACUG ......((((......(((((((....(((..(((.....)))..)))....))))))).((((((((((...(((((....)))))))))))))))..)))).......... ( -22.50, z-score = -2.60, R) >droSec1.super_6 673951 102 - 4358794 UGCUUUGAUUUGAUUUGUUU--------UU---UGUUAUUUGUGAAACGAAUUUUAAACUGUAUCCCUUGCUCUUCAGCUUGCUGAAUAAGGGGUAUCUGAUCGUCUAUACUG ......((((.(((((((((--------(.---..........)))))))))).......((((((((((...(((((....)))))))))))))))..)))).......... ( -23.10, z-score = -3.10, R) >consensus UGCUUUGAUUUUAUUUGUUU________UU_A_UGUUAUUUGUGAAACGAAUUUUAAACUGUAUCCCUUGCUCUUCAGCUUGCUGAAUAAGGGGUAUCUGAUCGUCUAUACUG ......(((..(((((((((........................))))))))).......((((((((((...(((((....)))))))))))))))......)))....... (-10.87 = -12.63 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:52 2011