| Sequence ID | dm3.chr3R |
|---|---|
| Location | 553,511 – 553,565 |
| Length | 54 |
| Max. P | 0.805108 |
| Location | 553,511 – 553,565 |
|---|---|
| Length | 54 |
| Sequences | 12 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 92.33 |
| Shannon entropy | 0.14490 |
| G+C content | 0.32204 |
| Mean single sequence MFE | -7.30 |
| Consensus MFE | -6.72 |
| Energy contribution | -6.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 553511 54 + 27905053 GCCUUUCAUGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .......((((((((..(((((.......))))).....)))))))).......----------- ( -8.00, z-score = -1.95, R) >dp4.chr2 24127404 58 + 30794189 GCCUUUCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUUUCGU------- .........((((((..(((((.......))))).....)))))).............------- ( -6.80, z-score = -1.21, R) >droPer1.super_3 6903384 58 + 7375914 GCCUUUCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUUUCGU------- .........((((((..(((((.......))))).....)))))).............------- ( -6.80, z-score = -1.21, R) >droAna3.scaffold_13340 22777990 58 + 23697760 GCCUUUCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUUUCGU------- .........((((((..(((((.......))))).....)))))).............------- ( -6.80, z-score = -1.21, R) >droEre2.scaffold_4770 863880 54 + 17746568 GCCUUUCAUGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .......((((((((..(((((.......))))).....)))))))).......----------- ( -8.00, z-score = -1.95, R) >droYak2.chr3R 868877 54 + 28832112 GCCUUUCAUGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .......((((((((..(((((.......))))).....)))))))).......----------- ( -8.00, z-score = -1.95, R) >droWil1.scaffold_181130 1520260 65 - 16660200 GCCUUUCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUUUCGUUUUGUUU .........((((((..(((((.......))))).....)))))).................... ( -6.80, z-score = -0.57, R) >droSec1.super_6 661329 54 + 4358794 GCCUUUCAUGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .......((((((((..(((((.......))))).....)))))))).......----------- ( -8.00, z-score = -1.95, R) >droSim1.chr3R 601609 54 + 27517382 GCCUUUCAUGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .......((((((((..(((((.......))))).....)))))))).......----------- ( -8.00, z-score = -1.95, R) >droVir3.scaffold_13047 6496547 54 + 19223366 GCCUUCCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .........((((((..(((((.......))))).....)))))).........----------- ( -6.80, z-score = -1.65, R) >droMoj3.scaffold_6540 32571409 54 - 34148556 GCGAUGCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .........((((((..(((((.......))))).....)))))).........----------- ( -6.80, z-score = -0.41, R) >droGri2.scaffold_14906 11798473 54 + 14172833 GCCUUCCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU----------- .........((((((..(((((.......))))).....)))))).........----------- ( -6.80, z-score = -1.65, R) >consensus GCCUUUCAAGUGUUAAUUUGUGCCACAGACACAAUUACCUAAUACAUUUUAAUU___________ .........((((((..(((((.......))))).....)))))).................... ( -6.72 = -6.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:50 2011