| Sequence ID | dm3.chr3R |
|---|---|
| Location | 551,766 – 551,866 |
| Length | 100 |
| Max. P | 0.510213 |
| Location | 551,766 – 551,866 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.76 |
| Shannon entropy | 0.44358 |
| G+C content | 0.37224 |
| Mean single sequence MFE | -20.59 |
| Consensus MFE | -10.55 |
| Energy contribution | -10.75 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 551766 100 + 27905053 --GAAACUACUUCU---GCUUCUUCUUCUUCAAU----UGGGAAUAA-------ACACGAAUUCAACUUGAUUGAAUGCAGCUUACUAAUUAGUAAGCUUGUAACUUUUCAGUCCG-- --((((........---...........((((((----..((.....-------............))..))))))(((((((((((....))))))).))))...))))......-- ( -19.53, z-score = -2.25, R) >droAna3.scaffold_13340 22776279 115 + 23697760 --GAACACAUAUUUAAUGCACAAUCUUUUUUACGGAUUUGCGAAUCAUGGGCUUACACAAAUGUAACUAAUUUGAAUGCGGAUUAAUAAUUGGCGA-CUUGCAAGUUUUGCGCUGGAA --.........((((.((((.............((((((((((.((...((.(((((....))))))).........((.(((.....))).))))-.)))))))))))))).)))). ( -18.71, z-score = 0.47, R) >droEre2.scaffold_4770 862366 97 + 17746568 --GAAGGCAGAUGU---GC---UUCUUCUUGAUG----UGGGAAUAG-------ACACGAAUUCAACUUGAUUGAAUGCGGCUUACUAAUUAGUAAGCUUGUAAGUUUUCAGUCCG-- --(((((((....)---))---..))))..(((.----((..(((..-------(((((.((((((.....)))))).))(((((((....))))))).)))..)))..)))))..-- ( -24.50, z-score = -1.16, R) >droYak2.chr3R 867180 89 + 28832112 AAGAAACUACAUUU---GC---UUCUUCUUGUUC----UGGGAAUAA-------ACACGAAUU----------GAAUGCGGCUUACUAAUUAGUAAGCUUGUAAGUUUUCACUCCG-- ..(((((((((...---((---...(((..((((----((.......-------.)).)))).----------))).))((((((((....))))))))))).)))))).......-- ( -19.30, z-score = -1.98, R) >droSec1.super_6 659812 98 + 4358794 --GAAACUACAUCU---GC--CUGCUUCUUUACG----UGGGAAUAA-------ACACGAAUUCAACUUGAUUGAAUGCGGCUUACUAAUUAGUAAGCUUGUAACUUUUCAGUCCG-- --((((.((((...---..--..((.......((----((.......-------.)))).((((((.....))))))))((((((((....))))))))))))...))))......-- ( -21.20, z-score = -2.05, R) >droSim1.chr3R 600089 98 + 27517382 --GAAACUACAUCU---GC--CUGCUUCUUUACG----UGGGAAUAA-------ACACGAAUUCAACUUGAUUGAAUGCUGCUUACUAAUUAGUAAGCUUGUAACUUUUCAGUCCG-- --............---..--...........((----((.......-------.))))..........((((((((((.(((((((....)))))))..)))....)))))))..-- ( -20.30, z-score = -2.14, R) >consensus __GAAACUACAUCU___GC__CUUCUUCUUUACG____UGGGAAUAA_______ACACGAAUUCAACUUGAUUGAAUGCGGCUUACUAAUUAGUAAGCUUGUAACUUUUCAGUCCG__ ........................................(((.................((((((.....))))))((((((((((....))))))).)))..........)))... (-10.55 = -10.75 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:50 2011