| Sequence ID | dm3.chr3R |
|---|---|
| Location | 541,130 – 541,242 |
| Length | 112 |
| Max. P | 0.796033 |
| Location | 541,130 – 541,242 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 58.58 |
| Shannon entropy | 0.59089 |
| G+C content | 0.42516 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -13.32 |
| Energy contribution | -12.11 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 541130 112 - 27905053 AGAUCAGGACUCUGAGGGGGCGUAUCGAUCACUUUACCACAGUUAUAAGGGCGCCAGGUGCGUACAUUGCACUCUUUAUGUUUCUGAUCA-UGUCCUCUUAAAAUAUAAAAUU .((((((((.(.(((((.(((((....((.(((.......))).))....))))).((((((.....))))))))))).).)))))))).-...................... ( -29.50, z-score = -1.57, R) >droAna3.scaffold_10513 166194 110 - 236354 AGGUCUGGACUCUGUGGGGGAGGAUUAAAUACGUGUGGAAUGUUGUAAAGCAUCCAAAGUCGAGUGUUUAUGGCCGUGUGCUUCGGGUCAUUGUCUUGAUAAAAAAAAUU--- .(((((...(((....)))..))))).........((((.((((....))))))))..((((((.....((((((.((.....))))))))...))))))..........--- ( -25.10, z-score = -0.44, R) >anoGam1.chr2L 36312142 112 + 48795086 AGGUCCGGACUUUGAGGUGGGGAAUUUAAUUGUUUCGGGACAUUAUAAAGCACCCACAGUCUGGUAUUCAAGGCUGUAUGCUUUGGAUCGUUAUCCUGUUGGAAAAUGUAUG- ....(((((((.....(((((...((((..((((....))))...))))...)))))))))))).(((((((((.....)))))))))((((.(((....))).))))....- ( -34.80, z-score = -2.19, R) >consensus AGGUCAGGACUCUGAGGGGGAGAAUUAAAUACUUUAGGAAAGUUAUAAAGCACCCAAAGUCGAGUAUUCAAGGCUGUAUGCUUCGGAUCAUUGUCCUGUUAAAAAAUAUA___ .((((((((.........(((...............................)))(((((((........)))))))....))))))))........................ (-13.32 = -12.11 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:49 2011