| Sequence ID | dm3.chr3R |
|---|---|
| Location | 536,310 – 536,410 |
| Length | 100 |
| Max. P | 0.547387 |
| Location | 536,310 – 536,410 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.49764 |
| G+C content | 0.44418 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -16.98 |
| Energy contribution | -16.86 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 536310 100 + 27905053 --------CCAUUCUCACUUACAUGUCUGUGACAGAUCUGGGCUGCACUCACGGCAAUUGUCGGCAGGUGCACAAAGCGCUAAAAUAUAUUGUUUGGGUGUAAAUUUA------------ --------(((.(((...(((((....))))).)))..)))..((((((((((((....))))...(((((.....))))).............))))))))......------------ ( -24.90, z-score = -0.40, R) >droSim1.chr3R 588761 100 + 27517382 --------CCAUUCUCACUUACAUGUCUGUGACAGAUCUGGGCUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUUA------------ --------(((.(((...(((((....))))).)))..)))..((((((..((((....))))...))))))....(((((((.((.....)).))))))).......------------ ( -25.70, z-score = -0.74, R) >droSec1.super_6 648860 100 + 4358794 --------CCAUUCUCACUUACAUGUCUGUGACAGAUCUGGGUUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUAAUUUUA------------ --------(((.(((...(((((....))))).)))..)))..((((((..((((....))))...))))))....((((((((((.....)))))))))).......------------ ( -29.30, z-score = -2.11, R) >droYak2.chr3R 854977 100 + 28832112 --------UCAAUCUCACUUACAUGUCUGUGCCAGAUCUGGGCUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUGAAAUAUAUUGUAUGGGUGUAAUUUUA------------ --------.............((.(((((...))))).))...((((((((((((....))))...(((((.....))))).............))))))))......------------ ( -24.90, z-score = -0.15, R) >droEre2.scaffold_4770 847727 100 + 17746568 --------ACUUUCUCACUUACAUGUCUGUGACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUGA------------ --------.............((.(((((...))))).))...((((((..((((....))))...))))))(((((((((((.((.....)).)))))))..)))).------------ ( -28.10, z-score = -1.00, R) >droAna3.scaffold_13340 22762064 100 + 23697760 --------UUCUUUGCGAUUACAUGUCUGGGCCAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAAGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUGACUUAA------------ --------................(((.((.(((....))).))(((((((((((....))))...(((((.....))))).............))))))))))....------------ ( -29.70, z-score = -0.98, R) >droPer1.super_3 6889388 102 + 7375914 ---GUUCUCUUUUUGCGCUUACAUGUCUGUCACAGAUCUGGGCUGCACCCACGACAAUUGUCGCCAAGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUCUGAUU--------------- ---...........(((((((...(((((...))))).))))).))(((((((((....))))...(((((.....))))).............)))))......--------------- ( -24.70, z-score = -0.21, R) >dp4.chr2 24112684 102 + 30794189 ---CUUCUCUUUUUGCGAUUACAUGUCUGUCACAGAUCUGGGCUGCACCCACGACAAUUGUCGCCAAGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUCUGAUU--------------- ---...........(((....((.(((((...))))).))...)))(((((((((....))))...(((((.....))))).............)))))......--------------- ( -22.70, z-score = 0.17, R) >droWil1.scaffold_181130 1509192 105 - 16660200 ---GUUUUUCUAUAAUUUUUGCAUGCCAUCUGCAGAUCUUGGCUGCACUCAUGACAAUUGUCGACAGGUGCAUAAAGCACUUAAGUAUAUUGUCUGGGUGUAAAAUCA------------ ---.........(((..((((((.......))))))..)))..((((((((.((((((...(...((((((.....))))))..)...))))))))))))))......------------ ( -29.00, z-score = -2.09, R) >droGri2.scaffold_14906 11785520 120 + 14172833 CUAUUCUUUCUUAUGUGCUUACAUGUCUGUCACAGAUUUGGGCUGUACCCACGACAAUUGUCGUCAGGUGCACAAGGCGCUCAAAUACAUUGUUUGGGUUUAAGGCUGGCGCCACCGACA .............((((((((...(((((...))))).))))).(((((.(((((....)))))..)))))))).(((((((((((.....)))))(((.....)))))))))....... ( -34.50, z-score = -0.90, R) >droMoj3.scaffold_6540 32555798 116 - 34148556 --UUACUCUUUCUUCUGUAUACAUGCUGCUCCCAGAUCUGGGGUGCACCCAUGACAAUUGCCGAAGAGUCCACAAAGCACUCAAGUAUAUUGUAUGGGUGUAAAACUGGCGGUCAUUA-- --....................((((((((((((....)))).((((((((((.(((((((....((((.(.....).))))..))).)))))))))))))).....))))).)))..-- ( -33.60, z-score = -1.41, R) >consensus ________CCUUUCUCACUUACAUGUCUGUGACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUUA____________ .....................((.(((((...))))).))......(((((((((....))))...(((((.....))))).............)))))..................... (-16.98 = -16.86 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:48 2011