| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,278,991 – 6,279,099 |
| Length | 108 |
| Max. P | 0.994188 |
| Location | 6,278,991 – 6,279,099 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 86.83 |
| Shannon entropy | 0.24792 |
| G+C content | 0.27708 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -17.86 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.994188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6278991 108 + 23011544 UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGCUUGUGACACA--AAAAAAAAAGAAAGAAAAACAACAGAAACACCAAACACACAA-UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((.(((((.....--.....................................)))))-)))))))))))))). ( -18.15, z-score = -2.42, R) >droSim1.chr2L 6077020 106 + 22036055 UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGUUUGUGACA----AAAAAAAAAGAAAGAAAAACAACAGAAACACCAAAAACACAA-UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((((.(((...----.....................................)))))-)))))))))))))). ( -18.20, z-score = -2.45, R) >droSec1.super_5 4350156 102 + 5866729 UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGUUUGUGACA----AAAAAAAAAGAAA----AACAACAGAAACACCAAACACACAA-UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((((((((...----.............----..................)))).))-)))))))))))))). ( -19.28, z-score = -2.65, R) >droYak2.chr2L 15695762 110 - 22324452 UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGUUUGUGACACACACAAAACAAAAAAAACAACACAACAGAAACACCAAACACACAA-UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((((((((..........................................)))).))-)))))))))))))). ( -19.05, z-score = -2.07, R) >droEre2.scaffold_4929 15206408 98 + 26641161 UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGUUUGUGACA---------AAAGGAAA---AAACAACAGAAACACCAAACACACAA-UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((((((((...---------...((...---..............))...)))).))-)))))))))))))). ( -19.43, z-score = -2.31, R) >droAna3.scaffold_12916 8236245 97 - 16180835 UAUGAAUUAUUUUAUGGCGUGUUAAAAUGCCUCUAUGUCAUUUGUGACC-------AAAAAAGAAACAGAAACAA-------GCCAAACACAUAAAUGACAUAAAUUAAAG .(((((....)))))(((((......)))))..(((((((((((((...-------...................-------........)))))))))))))........ ( -19.31, z-score = -3.19, R) >consensus UAUGAAUUAUUUAAUGGCGUGUUUAAAUGCCUUUAUGUCGUUUGUGACA____AAAAAAAAAGAAA_AAAAACAACAGAAACACCAAACACACAA_UGACAUAAAUUAAAA .........(((((((((((......))))).((((((((.(((((............................................))))).)))))))))))))). (-17.86 = -17.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:55 2011