| Sequence ID | dm3.chr3R |
|---|---|
| Location | 487,167 – 487,298 |
| Length | 131 |
| Max. P | 0.555825 |
| Location | 487,167 – 487,298 |
|---|---|
| Length | 131 |
| Sequences | 3 |
| Columns | 139 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.30869 |
| G+C content | 0.37356 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -19.92 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 487167 131 - 27905053 UAUAUUUGUUUGACGAUUUUCCAGGCACCAGAACUUGGGA------GACACAAG-UACUUACAUACAUACAUACAUAGAGAUGUUUUUUUUUUAGAUUUUGAAACUCAAGUUCGG-AAGACGAUGAACUCCAUAUCGCC .......(((((.((.((((((.(....).(((((((((.------.......(-((......)))...((....((((((.......)))))).....))...)))))))))))-)))))).)))))........... ( -24.80, z-score = -1.34, R) >droSec1.super_6 600879 126 - 4358794 -------------UCAUUUUCUAGGCACCAGAACUUGGGAAUUGGGAAUUCGAGUUGGGUAAGUACAUACAUACAUUAUUAGAAGAGUUUUUCAGAUUUUGAAACCCAAGUUCGGAAAGACGAUUAACUCCAUAUCGCC -------------..........(((....(((((((((......((((((...((..(((((((......))).))))..)).))))))(((((...))))).)))))))))(((............))).....))) ( -28.30, z-score = -1.18, R) >droSim1.chr3R 539179 126 - 27517382 -------------UCAUUUUCCAGGCACCAGAACUUGGGAAUUGGGAAUUCGAGUUGUGUAAGUACAUACAUACAUUAUUAGAAGAUUUUUUCAGAUUUUGAAACCCAAGUUCGGAAAGACGAUGAACUCCAUAUCGCC -------------...((((((.(....).(((((((((..(..(((.(((.(((.(((((.((....)).))))).))).)))((.....))...)))..)..))))))))))))))).(((((.......))))).. ( -30.60, z-score = -1.93, R) >consensus _____________UCAUUUUCCAGGCACCAGAACUUGGGAAUUGGGAAUUCGAGUUGCGUAAGUACAUACAUACAUUAUUAGAAGAUUUUUUCAGAUUUUGAAACCCAAGUUCGGAAAGACGAUGAACUCCAUAUCGCC .......................(((.((.(((((((((..................((((((((......))).))))).........((((((...)))))))))))))))))......((((.......))))))) (-19.92 = -20.27 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:43 2011