| Sequence ID | dm3.chr3R |
|---|---|
| Location | 452,455 – 452,506 |
| Length | 51 |
| Max. P | 0.545790 |
| Location | 452,455 – 452,506 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 89.68 |
| Shannon entropy | 0.14128 |
| G+C content | 0.37645 |
| Mean single sequence MFE | -9.40 |
| Consensus MFE | -9.17 |
| Energy contribution | -9.07 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 452455 51 + 27905053 UUCGAGUUAUUAGUGUUUUUU-CCAUUAAGAGCAUCCGCUUGAUUGAAUAUC .((((((.....((((((((.-.....))))))))..))))))......... ( -9.70, z-score = -2.23, R) >droSim1.chr3R 506106 52 + 27517382 UUCGAGUCAUUAGUGUUUUUUUCGAUUAAGAGCGUUCGCUCGAUGGAGUAUC .((((((......(((((((.......)))))))...))))))......... ( -9.00, z-score = 0.16, R) >droSec1.super_6 568133 51 + 4358794 UUCGAGUCAUUAGUGUUUUUU-CGAUUAAGAGCGUUCGCUCGAUGGAAUAUC .((((((......(((((((.-.....)))))))...))))))......... ( -9.50, z-score = -0.12, R) >consensus UUCGAGUCAUUAGUGUUUUUU_CGAUUAAGAGCGUUCGCUCGAUGGAAUAUC .((((((....(((((((((.......))))))))).))))))......... ( -9.17 = -9.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:41 2011