| Sequence ID | dm3.chr3R |
|---|---|
| Location | 437,531 – 437,627 |
| Length | 96 |
| Max. P | 0.551716 |
| Location | 437,531 – 437,627 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Shannon entropy | 0.29610 |
| G+C content | 0.37923 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -13.58 |
| Energy contribution | -15.33 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 437531 96 - 27905053 UAUCGGAUAGUCGAGUCUUAUCU--------------------AUACCGAUU-AUAUAUUUUGAUUAUAGAAGCCGUGAAAGAAAUGCGCAACAAAUCCACUGCAUCGCAUUUGAUU ...((((((((((((....(((.--------------------.....))).-......))))))))).....)))......(((((((...((.......))...))))))).... ( -13.50, z-score = 1.04, R) >droSim1.chr3R 489214 117 - 27517382 UAUCUGAUAGUCGAGUCCUAGCCAAGCCGCAAGGUAUCAAGCGAUACCGCUUGACAUGAUUUGAUUAUAAAAACCGUGAAAUAAAUGCGCAACAAAUGCACUGCAUCGUAUUUGAAU ......(((((((((((........(((....))).(((((((....)))))))...))))))))))).......(((.........)))..(((((((........)))))))... ( -32.90, z-score = -3.34, R) >droSec1.super_6 3816102 110 + 4358794 UAUCUGAUAGUCGAGUCCUAGC-------CAAGGUAUCAAGCGAUACCGCUUGAUAUGAUUUGAUUAUAAAAACCGUGAAAUAAAUGCGCAACAAAUGCACUGCGUCGUAUUUCAUU ......(((((((((((((...-------..))((((((((((....))))))))))))))))))))).......((((((((...(((((..........)))))..)))))))). ( -34.70, z-score = -4.72, R) >consensus UAUCUGAUAGUCGAGUCCUAGC_______CAAGGUAUCAAGCGAUACCGCUUGAUAUGAUUUGAUUAUAAAAACCGUGAAAUAAAUGCGCAACAAAUGCACUGCAUCGUAUUUGAUU ......(((((((((((..(((..........((((((....)))))))))......)))))))))))..............(((((((...((.......))...))))))).... (-13.58 = -15.33 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:40 2011