| Sequence ID | dm3.chr3R |
|---|---|
| Location | 364,063 – 364,163 |
| Length | 100 |
| Max. P | 0.580598 |
| Location | 364,063 – 364,163 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.80 |
| Shannon entropy | 0.48388 |
| G+C content | 0.39468 |
| Mean single sequence MFE | -14.33 |
| Consensus MFE | -7.76 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 364063 100 - 27905053 UACGCAACAUAAAUGAAGUUAACAACCUGUCAAAUUGCUAAAGUAUUUCCGCUGUUGACAGCCUUCUUCUUCCUCAAUU---CUCCCAGCGCAGCCUCAUUAU-------------- ..(((.........((((........(((((((...((............))..))))))).......)))).......---......)))............-------------- ( -12.71, z-score = -0.43, R) >droGri2.scaffold_14906 1837705 100 + 14172833 UACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUU---CCCCCAACGUCACCUCGUCCA-------------- ..............((((........(((((((...((..((....))..))..)))))))....))))..........---......(((......)))...-------------- ( -12.90, z-score = -1.99, R) >droMoj3.scaffold_6540 14373624 97 - 34148556 UACACAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUUAAUU---CCCAUCACG---CCUCCUCCG-------------- ..............((((........(((((((...((..((....))..))..)))))))....))))..........---.........---.........-------------- ( -12.30, z-score = -2.49, R) >droVir3.scaffold_13047 1957975 97 + 19223366 CACGCAACAUAAAUGAAGUUAACAAUUUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUUAAUU---CCCAUAACG---CCUCAUCCA-------------- ..............((((........(((((((...((..((....))..))..)))))))....))))..........---.........---.........-------------- ( -10.10, z-score = -0.51, R) >droWil1.scaffold_181130 4361300 100 - 16660200 UACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUU---CCCACAACGUUGCCUCUUUUG-------------- ...(((((.........(....)...(((((((...((..((....))..))..)))))))..................---........)))))........-------------- ( -15.50, z-score = -2.30, R) >droPer1.super_3 3001514 103 - 7375914 UACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUUCCCCCCAUAGUGUUGCCUCUUUAG-------------- ...((((((((((.((((........(((((((...((..((....))..))..)))))))....)))))))................)))))))........-------------- ( -17.99, z-score = -3.07, R) >dp4.chr2 20256442 103 - 30794189 UACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUUCCCCCCAUAGUGUUGCCUCUUUAG-------------- ...((((((((((.((((........(((((((...((..((....))..))..)))))))....)))))))................)))))))........-------------- ( -17.99, z-score = -3.07, R) >droAna3.scaffold_13340 10332935 102 + 23697760 -ACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUUCCCAACGCGGCGCUGCCUCUUCAG-------------- -............(((((........(((((((...((..((....))..))..)))))))..........................(((...))).))))).-------------- ( -16.90, z-score = -1.04, R) >droEre2.scaffold_4770 694993 94 - 17746568 UACGCAACAUAAAUGAAGUUAACAACCUGUCAAAUUGCUAAAUUACUUCC---GGUAACAGCC---UUCUUCCUCAAUU---CUCCGAUCGCAGCCUCCUUCU-------------- ...((.........(((((.........((......))......))))).---(((....)))---.............---........))...........-------------- ( -6.76, z-score = 0.87, R) >droYak2.chrX 16756774 100 + 21770863 ------------UCGACAACAACAACCAG--AUGCUGCAGAACCAUGGCGGCAAUCACUAGCA---AUGUGUCGCGAUUGGAGCCAAUGCGCGGUAUUUCCAUAAUCAUUGAAUCGC ------------..((((..........(--(((((((.........))))).))).......---...))))((((((.((((......))((.....)).......)).)))))) ( -23.15, z-score = 0.64, R) >droSec1.super_6 464211 100 - 4358794 UACGCAACAUAAAUGAAGUUAACAACCUGUCAAAUUGCUAAAUUAUUUCCGCUGUUGACAGCCUUCUUCUUCCUCAAUU---CUCCCAGCGCAGCCUCAUUAU-------------- ..(((.........((((........(((((((...((..((....))..))..))))))).......)))).......---......)))............-------------- ( -12.81, z-score = -0.89, R) >droSim1.chr3R 414699 100 - 27517382 UACGCAACAUAAAUGAAGUUAACAACCUGUCAAAUUGCUAAAUUAUUUCCGCUGUUGACAGCCUUCUUCUUCCUCAAUU---CUCCCAGCGCAGCCUCAUUAU-------------- ..(((.........((((........(((((((...((..((....))..))..))))))).......)))).......---......)))............-------------- ( -12.81, z-score = -0.89, R) >consensus UACGCAACAUAAAUGAAGUUAACAAUCUGUCAAAUUGCUAAAUUAUUUCUGCUGUUGACAGCCUUCUUCUUUCUCAAUU___CCCACAGCGCAGCCUCUUUAG______________ ..............((((........(((((((...((............))..))))))).......))))............................................. ( -7.76 = -8.38 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:36 2011