| Sequence ID | dm3.chr3R |
|---|---|
| Location | 348,344 – 348,421 |
| Length | 77 |
| Max. P | 0.960303 |
| Location | 348,344 – 348,421 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 53.18 |
| Shannon entropy | 0.69720 |
| G+C content | 0.38542 |
| Mean single sequence MFE | -14.15 |
| Consensus MFE | -6.50 |
| Energy contribution | -5.75 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 348344 77 - 27905053 -------------------UACCCCGAUAAGCAUCCACUGCUAUAAAUAAUGUCUCAGGUCCACUUUGAACAGAGGACCUGUCUGCCCUACCUAUU -------------------..........((((.....)))).........((..(((((((.((......)).)))))))...)).......... ( -15.60, z-score = -1.75, R) >droYak2.chr3R 711845 94 - 28832112 UGUGCUAAAUUAGUCCCACCACCACUGUAAAUAUUAUAUAUUGU--AUAAUGUUUUGUGUCCAAUUUGAAACGAGGACCUGUCUACAGAACUUAUU ............(((((.....(((...(((((((((((...))--))))))))).)))((......))...).))))(((....)))........ ( -14.30, z-score = -0.34, R) >droSim1.chr3R 397428 77 - 27517382 -------------------UACCUCGAUAUGCGUCCACUGCUAUAAAUAAUGUCUCAGGUCCACUUUGAACAGAGGACCUGUCUACCCUACCUAUU -------------------......((((((((.....)))........))))).(((((((.((......)).)))))))............... ( -14.20, z-score = -1.09, R) >droMoj3.scaffold_6540 14352202 76 - 34148556 -------------------UAGACUAUCAAGCGUUUCGUUCUUAAAGAAUUUUCAUAUAUUUUAUAUAUAGAGAGAA-AUGCCCACCUUCCGCAUU -------------------...........(((((((((((.....))))((((.(((((.....))))))))))))-)))).............. ( -12.50, z-score = -2.32, R) >consensus ___________________UACCCCGAUAAGCAUCCACUGCUAUAAAUAAUGUCUCAGGUCCAAUUUGAACAGAGGACCUGUCUACCCUACCUAUU .......................................................(((((((............)))))))............... ( -6.50 = -5.75 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:35 2011