| Sequence ID | dm3.chr3R |
|---|---|
| Location | 336,893 – 336,966 |
| Length | 73 |
| Max. P | 0.776633 |
| Location | 336,893 – 336,966 |
|---|---|
| Length | 73 |
| Sequences | 3 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 92.69 |
| Shannon entropy | 0.10064 |
| G+C content | 0.31050 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -11.68 |
| Energy contribution | -10.13 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.63 |
| Structure conservation index | 1.05 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 336893 73 + 27905053 UAAAGAAAUAUACGCUUUAGGAAGAAAGGUGUGAAAGCGAAGAUUCAAGAAAUUUCUUCAUAUGGAACUUUUU .((((.....((((((((.......)))))))).....(((((...........)))))........)))).. ( -10.90, z-score = -0.37, R) >droSim1.chr3R 389504 73 + 27517382 UAAAGAAAUAUACGCUUCAGGAACAACGGUGUGAAAGCGAAAAUUUAAGAAAGUUGUUCAUAUGGAACUUUUU ...............((((.(((((((..(((....))).............)))))))...))))....... ( -11.46, z-score = -0.81, R) >droSec1.super_6 442784 73 + 4358794 UAAAGAAAUAUACGCUUCAGGAACAACGGUGUGAAAGCGAAGAUUUAAGAAAGUUGUUUAUAUGGAACUUUUU .....((((...(((((((.(........).)).)))))...)))).((((((((.(......).)))))))) ( -11.00, z-score = -0.70, R) >consensus UAAAGAAAUAUACGCUUCAGGAACAACGGUGUGAAAGCGAAGAUUUAAGAAAGUUGUUCAUAUGGAACUUUUU ...............((((.(((((((....((((........)))).....)))))))...))))....... (-11.68 = -10.13 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:34 2011