| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,277,737 – 6,277,823 |
| Length | 86 |
| Max. P | 0.856919 |
| Location | 6,277,737 – 6,277,823 |
|---|---|
| Length | 86 |
| Sequences | 6 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 77.14 |
| Shannon entropy | 0.43731 |
| G+C content | 0.35321 |
| Mean single sequence MFE | -15.17 |
| Consensus MFE | -8.68 |
| Energy contribution | -9.71 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6277737 86 - 23011544 AUAAACAAAUUGGUUUCAUUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUU- ...........(((..((((((.((((((((((((((................)))))))))))..)))....))))))...))).- ( -19.99, z-score = -3.23, R) >droSim1.chr2L 6075706 86 - 22036055 AUAAACAAAUUUUUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUU- .(((((....................(((((((((((................)))))))))))(((((....))))))))))...- ( -18.39, z-score = -3.37, R) >droSec1.super_5 4348814 86 - 5866729 AUAAACAAAUUGGUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUU- .((((((.((((....))))...((((((((((((((................)))))))))))..)))........))))))...- ( -19.69, z-score = -2.83, R) >droYak2.chr2L 15694359 86 + 22324452 AUAAACAAAUUUGUUUCAGUAUCGCAGCGAAUAAAGUCAACACAUAGUCAUCCGUUUCAUUCGCAUUGCCCUCGUAAUGUUUACUU- .(((((....................((((((.(((..................))).))))))(((((....))))))))))...- ( -9.17, z-score = -0.13, R) >droEre2.scaffold_4929 15205041 86 - 26641161 AUAAACAAAUUUGUUUCAGCAUCGCAGCGCUUGAAGUCAACAAAUAUUCAUCCGCUUCACUCGCAUUGCCCUCGUAAUGUUUACUU- .((((((....(((....)))..((((((..((((((................))))))..)))..)))........))))))...- ( -14.19, z-score = -1.28, R) >droWil1.scaffold_180708 5218521 78 + 12563649 AGAAAGAAACUAUUUUAAGUA--GCAAUAAG-------AACAAUCAGACAUUUGUUGUUUAGACAAGGUAAUGUUAAUAUCAGUCUG .........((((.....)))--).......-------......(((((..(((((.....)))))((((.......)))).))))) ( -9.60, z-score = 0.27, R) >consensus AUAAACAAAUUUGUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUU_ .......................((((((((((((((................)))))))))))..))).................. ( -8.68 = -9.71 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:54 2011