| Sequence ID | dm3.chr3R |
|---|---|
| Location | 310,935 – 311,031 |
| Length | 96 |
| Max. P | 0.845130 |
| Location | 310,935 – 311,031 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 56.92 |
| Shannon entropy | 0.89357 |
| G+C content | 0.64910 |
| Mean single sequence MFE | -43.26 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.09 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.96 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 310935 96 + 27905053 UCGGCGGCGGCUGAGGCUCAGGCAUUGGCCGAAUUGGUGGCCGGCGAAAAGCCGGGCGCUUCGGCCGGAACUA------ACUCCACUGAAGACUCGCCGCGC--- ...(((.((((.(((..((((.....((((((...((((.(((((.....))))).))))))))))(((....------..))).))))...))))))))))--- ( -51.70, z-score = -3.15, R) >anoGam1.chr2R 56981812 102 - 62725911 GACUCGCAAACCGCAACCGGAGACGCCGGCGGCCUCGAUGCGGAUGGCAAACGACGCGGUUCAAACGAUCUUGGCAGUGGUGCACCGGACGGCGCGAAUGGA--- ...((((...(((...((((.(.(((((.(.(((..((((.((((.((.......)).))))...).)))..))).))))))).)))).))).)))).....--- ( -33.50, z-score = 1.45, R) >droWil1.scaffold_181130 4309628 97 + 16660200 ------GUAGUAAAGAC-CAAUUCCUAGAUAAUGCCGGGGAAAAAGCGGACUCGGCGUCAGCUGGCGCCGGUUCGGGAAGCGCCGACACGGACACGGUCAGCGA- ------..........(-(..((((..(......)..)))).....(((((.(((((((....))))))))))))))...(((.(((.((....))))).))).- ( -36.20, z-score = -1.34, R) >droAna3.scaffold_13340 10293261 102 - 23697760 ---GCUGCGGCAGAGGCUCAAGCUUUGGCCGCCGUUGUGUCCGGGGAGAAGCCCGGCUCCGUAGGAGCACCUGGUGGAGAUCUCGCCGAAGAUGAGCUUCCUCUC ---((....)).((((((((..(((((((((((........((((......))))(((((...)))))....))))((....))))))))).))))))))..... ( -43.30, z-score = -0.31, R) >droEre2.scaffold_4770 17084831 93 - 17746568 ---UCGGCGGCUGAGGCUCAGGCGUUGGCUGAAUUGGCGGCCGGCGAAAAGCCGGGCGUUUCGGUAGGGACUG------AUUCCGCUGAAGACUCGCCGCGC--- ---...(((((.(((.((..(((....((((((...(((.(((((.....))))).))))))))).((((...------.)))))))..)).))))))))..--- ( -44.80, z-score = -1.58, R) >droYak2.chr3R 691417 93 + 28832112 ---UCGGUGGCUGAGGCUCAGGCAUUGGCUGAAUUGGUGGCCGGCGAAAAGAUGGGCGCUUCGGUAGGGACUG------AUUCCGCUGAAGACUCGCCGCGC--- ---...(((((.((((((((..(.((((((........)))))).)......))))).(((((((.((((...------.))))))))))).))))))))..--- ( -36.20, z-score = -0.59, R) >droSec1.super_6 418316 96 + 4358794 UCGGCGGCGGCUGAGGCUCAGGCAUUGGCCGAAUUGGUGGCCGGCGAAAAGCCGGGUGCUUCGGCCGGAACUA------AUUCCGCUGAAGACUCGCCGCGC--- ...(((.((((.(((.((..(((...((((((...((((.(((((.....))))).))))))))))((((...------.)))))))..)).))))))))))--- ( -50.60, z-score = -2.68, R) >droSim1.chr3R 371997 96 + 27517382 UCGGCGGCGGCUGAGGCUCAGGCAUUGGCCGAAUUGGUGGCCGGCGAAAAGCCGGGCGCUUCGGCCGGAACUA------AUUCCGCUGAAGACUGGCCGUGC--- ...(((.(((((.((.((..(((...((((((...((((.(((((.....))))).))))))))))((((...------.)))))))..)).))))))))))--- ( -49.80, z-score = -2.54, R) >consensus ___GCGGCGGCUGAGGCUCAGGCAUUGGCCGAAUUGGUGGCCGGCGAAAAGCCGGGCGCUUCGGCCGGAACUG______AUUCCGCUGAAGACUCGCCGCGC___ ......(((((...(((.((.....)))))...((((((((((((.....))).)))...((....))...............))))))......)))))..... (-12.93 = -13.09 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:34 2011