| Sequence ID | dm3.chr3R |
|---|---|
| Location | 306,414 – 306,481 |
| Length | 67 |
| Max. P | 0.550229 |
| Location | 306,414 – 306,481 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 70.32 |
| Shannon entropy | 0.47437 |
| G+C content | 0.26026 |
| Mean single sequence MFE | -9.15 |
| Consensus MFE | -6.50 |
| Energy contribution | -6.50 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 306414 67 + 27905053 --AAUUUUUUGGUUUAAUUUGACUAAACAGCAGUAAUUA-AUGCUCGGGCUUUGUAACAAUCAACAAAUA --.....(((((((......)))))))(((((.......-.)))).)...(((((........))))).. ( -8.40, z-score = -0.17, R) >droEre2.scaffold_4770 655238 56 + 17746568 AGUUUUGUUUGCUUUACGUUUAGUAAAAGACAGUAAUUAUACAUUUACACUCAAUA-------------- .(((...((((((........)))))).))).((((........))))........-------------- ( -6.80, z-score = -0.50, R) >droSec1.super_6 413255 67 + 4358794 --AUUUGUUUGGUUUAAUUUGACUAAACAGCAAUAAUUA-AUGAUUGGGCUUUGUAAGAAUCAACAAAUA --..((((((((((......))))))))))((((.....-...))))...(((((........))))).. ( -10.70, z-score = -1.05, R) >droSim1.chr3R 366927 67 + 27517382 --AUUUGUUUGGUUUAAUUUGACUAAACAGCAAUAAUUA-AUGAUUGGGCUUUGUAAGAAUCAACAAAUA --..((((((((((......))))))))))((((.....-...))))...(((((........))))).. ( -10.70, z-score = -1.05, R) >consensus __AUUUGUUUGGUUUAAUUUGACUAAACAGCAAUAAUUA_AUGAUUGGGCUUUGUAAGAAUCAACAAAUA ....((((((((((......))))))))))........................................ ( -6.50 = -6.50 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:33 2011