| Sequence ID | dm3.chr3R |
|---|---|
| Location | 296,961 – 297,060 |
| Length | 99 |
| Max. P | 0.807361 |
| Location | 296,961 – 297,060 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.82 |
| Shannon entropy | 0.44553 |
| G+C content | 0.56509 |
| Mean single sequence MFE | -34.60 |
| Consensus MFE | -18.38 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 296961 99 + 27905053 CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA-UCAGGC-----AGCGGCGGCGACAGCCGUCAACAUCGA------ ..(((((((.......(((((((....)))...(((((.....)))))..))))((((((......-))))))-----)))((((((....))))))...)))).------ ( -38.60, z-score = -2.16, R) >droEre2.scaffold_4770 644216 99 + 17746568 CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA-UCAGGC-----AGCGGCGGCGAAAACCGUCAACAUCAA------ ...((((.........((.((((.....((((.(((((.....))))).)).))((((((......-))))))-----))))))((((.....))))..))))..------ ( -33.70, z-score = -1.69, R) >droYak2.chr3R 676785 99 + 28832112 CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA-UCAGGC-----AGCGGCGGCGAAAACCGUCAACAUCGA------ ..(((((.........((.((((.....((((.(((((.....))))).)).))((((((......-))))))-----))))))((((.....))))..))))).------ ( -35.40, z-score = -1.82, R) >droSec1.super_6 402767 99 + 4358794 CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA-UCAGGC-----AGCGGUGGCGACAACCGUCAACAUCGA------ ..(((((..(((((.((((((((....)))...(((((.....)))))..))))((((((......-))))))-----.).))))).(((....)))..))))).------ ( -38.10, z-score = -2.60, R) >droSim1.chr3R 357297 99 + 27517382 CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA-UCAGGC-----AGCGGUGGCGACAACCGUCAACAUCGA------ ..(((((..(((((.((((((((....)))...(((((.....)))))..))))((((((......-))))))-----.).))))).(((....)))..))))).------ ( -38.10, z-score = -2.60, R) >droGri2.scaffold_14906 3935293 93 + 14172833 CGCGAUGCUUUAACUUGCGCGCUUCUAAGCCAACUGACGAUUGAAUGGAUGCGCCUGUGACCCUUA-UCAGUC-GACAGACGACAGCGACGCCGA---------------- .(((.((((.....(((.((........)))))(((.(((((((..((...((....))..))...-))))))-).))).....)))).)))...---------------- ( -24.00, z-score = -0.51, R) >droWil1.scaffold_181130 13780110 90 - 16660200 --CGAUGCUUUACCUUGCACGCUUUUCAGCCAACUGACAGUUGGUUGGAUGUGCGUCUGAACCUUA-UCAGG--GAGGCACAAAAACGACAACGA---------------- --.(.((((((.....(((((...((((((((((.....))))))))))))))).(((((......-)))))--)))))))..............---------------- ( -28.60, z-score = -2.32, R) >droAna3.scaffold_13340 8020478 111 - 23697760 CGCGAUGCUCCGCUGUUGGAGCUUUUGAGCCAACUGACGGCUGGUCGGAUGUGCGUCUGAACCUUAAUCAGGCGGGGUAGUAGUGGCAACGACAAGCGACAACCACGGCGG (((..((((((((((((((..(....)..)))))(((.....((((((((....))))).)))....))))))))))))...((((...((.....))....)))).))). ( -40.30, z-score = -0.50, R) >consensus CGCGAUGCUCCACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUA_UCAGGC_____AGCGGCGGCGACAACCGUCAACAUCGA______ .....((((((.....(((((((....)))...(((((.....)))))..))))((((((.......))))))........)).))))....................... (-18.38 = -18.35 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:30 2011