| Sequence ID | dm3.chr3R |
|---|---|
| Location | 286,931 – 286,985 |
| Length | 54 |
| Max. P | 0.997676 |
| Location | 286,931 – 286,985 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 60.88 |
| Shannon entropy | 0.68757 |
| G+C content | 0.37393 |
| Mean single sequence MFE | -9.91 |
| Consensus MFE | -8.10 |
| Energy contribution | -7.14 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.15 |
| SVM RNA-class probability | 0.997676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 286931 54 + 27905053 AAAGGUAUACUUUCACGUAAAUGUAAACGUUUACGGCUCUUUU--CCUAACACUUG ..(((..........((((((((....))))))))........--)))........ ( -10.37, z-score = -2.48, R) >droYak2.chr3R 664507 54 + 28832112 -AGAAAACAGCUUUACGUGAAU-UAAUAGAUUGCGGUUUUUUUUUCCUAACCAUCG -(((((((.((..(..((....-..))..)..)).))))))).............. ( -5.00, z-score = 0.32, R) >droSec1.super_6 392477 54 + 4358794 GUAUGUAUACCUUCACGUAAAUGUAAACGUUUACGGCUUUUUU--CCUAACACUUG ...............((((((((....))))))))........--........... ( -8.60, z-score = -1.66, R) >droSim1.chr3R 346577 54 + 27517382 GUAUGUAUACCUUCACGUAAAUGUAAACGUUUACGGCUUUUUU--CCUAACACUUG ...............((((((((....))))))))........--........... ( -8.60, z-score = -1.66, R) >dp4.chr2 6309324 52 - 30794189 --AAAAGCACAGUUGGAUGGGCGUGUGCGCUGGUUGUUUGUCA--AUUAGCAGGUU --....((((((((.....))).)))))((((((((.....))--))))))..... ( -17.00, z-score = -2.37, R) >consensus _AAAGUAUACCUUCACGUAAAUGUAAACGUUUACGGCUUUUUU__CCUAACACUUG ...............((((((((....))))))))..................... ( -8.10 = -7.14 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:29 2011