| Sequence ID | dm3.chr3R |
|---|---|
| Location | 146,729 – 146,790 |
| Length | 61 |
| Max. P | 0.855377 |
| Location | 146,729 – 146,790 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 96.72 |
| Shannon entropy | 0.04516 |
| G+C content | 0.46448 |
| Mean single sequence MFE | -11.30 |
| Consensus MFE | -11.09 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 146729 61 + 27905053 UCGGUUAACUCGACUGCAUAGAUUACGCACCAGCCACUUCAAUUGGCUGCCAAAUACCUUA ..(((.........(((.........))).((((((.......))))))......)))... ( -10.90, z-score = -1.07, R) >droSim1.chr3R 219684 61 + 27517382 UCGGUGAACUCGACUGCAUAGAUUACGCACCAGCCACUUCAAUUGGCUGCCAAAUACCUUU ..((((........(((.........))).((((((.......)))))).....))))... ( -12.70, z-score = -1.52, R) >droSec1.super_6 265436 61 + 4358794 UCGGUGAACUCGACUGCAUAGAUUACGCACCAGCCACUUCAAUUGGUUGCCAAAUACCUUU ..((((........(((.........))).((((((.......)))))).....))))... ( -10.30, z-score = -0.47, R) >consensus UCGGUGAACUCGACUGCAUAGAUUACGCACCAGCCACUUCAAUUGGCUGCCAAAUACCUUU ..((((........(((.........))).((((((.......)))))).....))))... (-11.09 = -11.20 + 0.11)
| Location | 146,729 – 146,790 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 96.72 |
| Shannon entropy | 0.04516 |
| G+C content | 0.46448 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -17.13 |
| Energy contribution | -17.47 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 146729 61 - 27905053 UAAGGUAUUUGGCAGCCAAUUGAAGUGGCUGGUGCGUAAUCUAUGCAGUCGAGUUAACCGA ...(((((((((((((((.......)))))..((((((...)))))))))))))..))).. ( -19.30, z-score = -2.22, R) >droSim1.chr3R 219684 61 - 27517382 AAAGGUAUUUGGCAGCCAAUUGAAGUGGCUGGUGCGUAAUCUAUGCAGUCGAGUUCACCGA ...(((((((((((((((.......)))))..((((((...)))))))))))))..))).. ( -19.30, z-score = -1.92, R) >droSec1.super_6 265436 61 - 4358794 AAAGGUAUUUGGCAACCAAUUGAAGUGGCUGGUGCGUAAUCUAUGCAGUCGAGUUCACCGA ...((((((((((.((((...........))))(((((...))))).)))))))..))).. ( -14.60, z-score = -0.41, R) >consensus AAAGGUAUUUGGCAGCCAAUUGAAGUGGCUGGUGCGUAAUCUAUGCAGUCGAGUUCACCGA ...(((((((((((((((.......)))))..((((((...)))))))))))))..))).. (-17.13 = -17.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:21 2011