| Sequence ID | dm3.chr3R |
|---|---|
| Location | 83,161 – 83,271 |
| Length | 110 |
| Max. P | 0.617858 |
| Location | 83,161 – 83,271 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.24 |
| Shannon entropy | 0.71125 |
| G+C content | 0.47082 |
| Mean single sequence MFE | -31.26 |
| Consensus MFE | -12.65 |
| Energy contribution | -11.79 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617858 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 83161 110 + 27905053 GACUCUAUUUUAUGCUGGGACCAAUUGUGAAAAUUGGGGUUUGCCGUUGGCAUGGCACAACAUGUGACAAGGAGUUGCCCAUGCCAAUGAAGUAAGAAUGAAUUGAGAUU---------- ..(((...(((((((..(..((((((.....))))))..)..))(((((((((((..((((.(.(....).).)))).)))))))))))........)))))..)))...---------- ( -34.00, z-score = -2.38, R) >droSim1.chr3R 165650 110 + 27517382 GACUAUACUUUAUGCUGGGACCCAUUGUGAAAAUUGGGGCUUGCCGUUGGCAUGGCACAACAUGUGACAAGGAGCUGCCCAUGCCAAUGAAGUAAGAAUGCAUUGAGAUU---------- .......(((.((((.....((((..((....)))))).(((((((((((((((((((.....))).((......)).)))))))))))..)))))...)))).)))...---------- ( -34.00, z-score = -1.63, R) >droSec1.super_6 210861 110 + 4358794 GACUAUACUUUAUGCUGGGACCCAUUGUGAAAAUUGGGGCUUGCCGUUGGCAUGGCACAACAUAUGACAAGGAGCUGCCCAUGCCAAUGAAGUAAGAAUGCAUUGAGGUU---------- .......(((.((((.....((((..((....)))))).(((((((((((((((((((..(.........)..).)).)))))))))))..)))))...)))).)))...---------- ( -33.70, z-score = -1.27, R) >droYak2.chr3R 445279 110 + 28832112 GGGUCUAUUUCAUGCUGGGACCCAUUCUAAAAAUUGGAGCUUGCCGUUGGCAUGGUACAACGUGUGACAAGGAGCUGCCCAUGCCAAUGAAGUAAGAAUUCUUUGAGAUU---------- ((((((...........))))))..........(..((((((((((((((((((((((.....))).((......)).)))))))))))..)))))....)))..)....---------- ( -31.40, z-score = -0.82, R) >droEre2.scaffold_4770 444592 110 + 17746568 GACUCUAUUUCAUGCUGGGACCCCUUGUGAAAAUCGGAGCUUGCCUUUGGCAUGGCACAACAUGUGACAAGGAGCUGCCCAUGCCCAUGAAGUAAGAAUGCAUUGAGAUU---------- ...((((((((((((((((..(((((((.(......(.(((((((...)))).))).)......).)))))).)...)))).))..))))))).))).............---------- ( -31.10, z-score = -0.61, R) >droAna3.scaffold_13340 11094410 106 + 23697760 GGCUGUACUUUAUGCUGGGACCCAUUGUUAACAUUGUUGCCAGCAAAUGGAGGGGCACGACAUAUGUCCGAGAGCUGCCCAUGCCCAUGAAGUGAGUGGAGUGGCU-------------- .(((.(((((..((((((.(..((.((....)).)).).)))))).((((..(((((.(((....)))(....).)))))....)))).....))))).)))....-------------- ( -32.20, z-score = 0.40, R) >droPer1.super_6 6002295 120 - 6141320 GACUGUACUUCAUGGUGUCGCCAAUUUUGAAGAUUAUAGCCAACAGCUGGCGUGGCACAACAUAUGUAAGGGAGUUGCCCAUGCCCUUGAGGUAAGUAGAACCGAGUAUGUAGUAUGUAG ....(((((.....(((((((.((((.....))))...((((.....))))))))))).((((((....((.(.(((((((......)).))))).)....))..))))))))))).... ( -31.40, z-score = -0.16, R) >dp4.chr2 5954542 120 - 30794189 GACUGUACUUCAUGGUGUCGCCAAUUCUGAAGAUUAUAGCCAACAGCUGGCGUGGCACAACAUAUGUUAGGGAGUUGCCCAUGCCCUUGAGGUAAAUAGAACCGAGUAUGUAGAGUGACU .(((.(((..(.((((.((((((..((....)).....((((.....)))).))))......(((.((((((.((.......)))))))).)))....)))))).)...))).))).... ( -30.50, z-score = 0.17, R) >droWil1.scaffold_181108 3284976 107 - 4707319 GAUUGUAUUUCUUUUUGGGUCCCAUUGUUAAGAUUAUAAUAAGCAAAAUGCGUGGUACGAUAUACAUACGUGAGUUGCCCAUGAAUAUGAAGUGAGUAAUUAUGAUU------------- ..(..(((((.....(((((..(.((((((......)))))).......((((((((.....))).)))))..)..))))).)))))..).((((....))))....------------- ( -17.90, z-score = 0.50, R) >droVir3.scaffold_12822 1373823 97 + 4096053 GGCUCUACUUUAUGCUCGGACCCAUUAUCAAGAUCAUCACCAGCAGCUGGCGUGGCGUGCCCUACGCCCGAGAGCUGCCCAUGCCCAUGAAGUAAGC----------------------- .(((.((((((((((..((............(.....)....((((((..((.((((((...))))))))..))))))))..))..)))))))))))----------------------- ( -32.30, z-score = -1.50, R) >droMoj3.scaffold_6540 33987534 108 + 34148556 GACUCUACUUCAUGCUUGGACCCAUCAUCAAGAUUGUCACCAACAACUGGCGGGGAGUCCCUUAUGAGAGGGAGCUGCCCAUGCCCAUGAAGUAAGAACACUUAUUUC------------ ...(((((((((((....(((..(((.....))).)))..........(((((((((((((((....)))))).)).))).)))))))))))).)))...........------------ ( -34.30, z-score = -2.18, R) >droGri2.scaffold_15074 5237413 96 - 7742996 GUCUCUACUUUAUGCUCGGACCCAUCGUCAAGAUUAUCAGCAGCAGUUGGCGUGGAGUGGUCUACGCUAGAGAGCUGCCAAUGCCCAUGAAGUAAG------------------------ .....(((((((((..(((((.....)))..........(((((..((((((((((....))))))))))...)))))...))..)))))))))..------------------------ ( -32.30, z-score = -1.94, R) >consensus GACUCUACUUCAUGCUGGGACCCAUUGUGAAGAUUGUAGCCAGCAGUUGGCGUGGCACAACAUAUGACAGGGAGCUGCCCAUGCCCAUGAAGUAAGAAUACAUUGAGAU___________ .....((((((((....(....).........................(((((((((..................)))).))))).)))))))).......................... (-12.65 = -11.79 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:16 2011