| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,471,369 – 2,471,419 |
| Length | 50 |
| Max. P | 0.727725 |
| Location | 2,471,369 – 2,471,419 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 72.60 |
| Shannon entropy | 0.49514 |
| G+C content | 0.44000 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -7.36 |
| Energy contribution | -7.24 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2471369 50 - 2517507 UUUGGAAACCAGUCCAGGGUCCAGUUUAUGGCCAGACAACUGAAUUAACA ...(....)((((....((.(((.....))))).....))))........ ( -9.70, z-score = 0.08, R) >droEre2.scaffold_4770 328133 50 - 17746568 UCUGGAAACCAGUCCGGGGUCCAGUUGGUAGUCAGAUUACUGAUUUAACC .(((((..((.....))..)))))..(((((((((....))))))..))) ( -16.70, z-score = -1.94, R) >droYak2.chr3R 317124 50 - 28832112 UCUGGAAACCAGUCCUGGGUCCAGUUAGUAGUCAGAUUACUGAAUUAGCC .(((((..(((....))).)))))((((((((...))))))))....... ( -13.30, z-score = -1.42, R) >droSim1.chr3R 56602 50 - 27517382 UUUGGAAACCAGUCCGGGGUCCAGUUGAUGGUCAGAUUACUGAAUUAACA ..((((..((.....))..))))((((((..((((....)))))))))). ( -15.30, z-score = -1.66, R) >droMoj3.scaffold_6540 10854459 50 - 34148556 AUUAAAAACCUGUCCGGUACAUGGAAGCUUUCCAGAUACUUGGCUUAAAA ...........(((.((((..((((.....))))..)))).)))...... ( -10.90, z-score = -1.52, R) >consensus UUUGGAAACCAGUCCGGGGUCCAGUUGAUAGUCAGAUUACUGAAUUAACA .(((((..((.....))..))))).......((((....))))....... ( -7.36 = -7.24 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:13 2011