| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,457,320 – 2,457,381 |
| Length | 61 |
| Max. P | 0.742244 |
| Location | 2,457,320 – 2,457,381 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 68.89 |
| Shannon entropy | 0.42151 |
| G+C content | 0.55361 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -14.67 |
| Energy contribution | -13.13 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2457320 61 - 2517507 GGCGUGGCAGUUUUGUGCGUUUUGUGGGCGUUCGAGCGGGCGUGGCAACAUGAAUCUAGAA ..(((((((......)))...((((.(.(((((....)))))).))))))))......... ( -13.50, z-score = 1.53, R) >dp4.Unknown_group_33 23011 58 + 31770 GAUGCCACAGAAUUUCGUCCUUUGUGGGGGCGGAAGUGGGCGGGGCGAAGU---UUUGAAA .......((((((((((((((..((....((....))..))))))))))))---))))... ( -20.50, z-score = -2.09, R) >droPer1.super_189 56127 58 - 63742 GAUGCCACAGAAUUUCGUCCUUUGUGGGGGCGGAAGUGGGCGGGGCGAAGU---UUUGAAA .......((((((((((((((..((....((....))..))))))))))))---))))... ( -20.50, z-score = -2.09, R) >consensus GAUGCCACAGAAUUUCGUCCUUUGUGGGGGCGGAAGUGGGCGGGGCGAAGU___UUUGAAA ..((((......(((((((((.....)))))))))...))))................... (-14.67 = -13.13 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:12 2011