| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,292,857 – 2,292,985 |
| Length | 128 |
| Max. P | 0.989428 |
| Location | 2,292,857 – 2,292,985 |
|---|---|
| Length | 128 |
| Sequences | 4 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 60.08 |
| Shannon entropy | 0.63797 |
| G+C content | 0.37224 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -10.61 |
| Energy contribution | -13.80 |
| Covariance contribution | 3.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2292857 128 - 2517507 ---CAACAACG-AAGUAUGUAAGAAUCACUCAAUUACUUGUGUAGUCAAACAAUCAAGUUGCCUGCGAGCAACGGUCAAUUCCUUUUUGAGUGUUUGCGCUGCUG--AUUGGCGAUCACUCUCUGUUCGCACAU ---...((((.-.....(((..((..(((..........)))...))..))).....))))..((((((((..((......)).....(((((....((((....--...))))..)))))..))))))))... ( -30.50, z-score = -0.04, R) >droSim1.chr2h_random 2316951 132 + 3178526 GAACAACGAUGUAUGUAUGUAAGAAUCACUCAAUUACUUGUGUACCCAAACACUCAAGUCGCCUGCGAGCAACGGUUAAUUCCUUUUUGAGUGUUUUCGCUACCA--AUCGGCGAUCACUCUUUGUUCGCAUAU ((((((.((.((..(((..(((((((......))).))))..)))..((((((((((((((....))).....((......))..)))))))))))(((((....--...)))))..)))).))))))...... ( -33.30, z-score = -2.25, R) >droSec1.super_69 167043 111 - 174750 -----------AAUAUAUAUAAGAA----------ACUUGUGUACUCAAAAACUCAAGUUUCCUGCGAGCAACGGUUAAUUCCUUUUUGAGUGUUUUCGCUACUA--AUCGGCGAUCACUCUUUGUUCGCAUAU -----------...........(((----------(((((.((........)).)))))))).(((((((((.((......)).....(((((...(((((....--...))))).))))).)))))))))... ( -35.70, z-score = -6.15, R) >droEre2.scaffold_4845 2072064 124 - 22589142 --------UUAUACGUGUGCGAACAUAUUUUAGAUAAAAAUGCUGUACACAUAAAAAAUAUAUCACGA--AGUGUUCAUUUUCCUUUUUUUUUUUUGUUUUGCCGGCAUUAUUUAUUUAUUUAUUCCCGCCCAU --------......(((.(((...(((...(((((((((((((((.....((((((((........((--(((....)))))........)))))))).....))))))).))))))))..)))...))).))) ( -21.29, z-score = -2.01, R) >consensus ________AUGUAUGUAUGUAAGAAUCACUCAAUUACUUGUGUACUCAAAAAAUCAAGUUGCCUGCGAGCAACGGUCAAUUCCUUUUUGAGUGUUUGCGCUACCA__AUCGGCGAUCACUCUUUGUUCGCACAU ...............................................................((((((((..((......)).....(((((...(((((.........))))).)))))..))))))))... (-10.61 = -13.80 + 3.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:09 2011