Locus 8630

Sequence ID dm3.chr3RHet
Location 2,279,230 – 2,279,336
Length 106
Max. P 0.739141
window11848

overview

Window 8

Location 2,279,230 – 2,279,336
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 78.77
Shannon entropy 0.34272
G+C content 0.44553
Mean single sequence MFE -28.95
Consensus MFE -19.89
Energy contribution -20.20
Covariance contribution 0.31
Combinations/Pair 1.30
Mean z-score -1.61
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.55
SVM RNA-class probability 0.739141
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3RHet 2279230 106 + 2517507
CGCAAACAAGUGCAGAAUACAAGGGAAAGGUAAGAAAAAAUUGAUCACUCGCCAAGCUAGGGGCUAAGCUAAGCGCUUAUCUAUUCACCGUAUUCUUGCACGUGUC
.....(((.(((((((((((..((((((((((((........((....))((..((((........))))..)).))))))).))).)))))))).))))).))). ( -30.30, z-score =  -2.43, R)
>droSec1.super_94 92122 106 + 93855
UGCAAACAAGUGCGGGAUACAAGGGAAAGGUAAGAAAAAAUUGAUCGCUCGCCAAGCUAGGCGCUACGCUAAGCGCUUAUCCAUUUACCGUAUUCUUGCACGUGUC
.....(((.(((((((((((...(((..((..((.............))..))....((((((((......))))))))))).......))).)))))))).))). ( -30.22, z-score =  -1.05, R)
>droSim1.chr2h_random 1705308 106 - 3178526
UGCAAACAAGUGCAGAAUACUAGAAAAAGGUAAGAAAAAUUUGAUCGCUCGCCAAGCUAGGCGCUAAGCUAAGUGCUUAUCUAUUCACAGUGUUCUUGCACGUGUC
.....(((.((((((((((((.(((..(((((((....(((((...(((((((......))))...)))))))).))))))).)))..))))))).))))).))). ( -32.30, z-score =  -2.66, R)
>droAna3.scaffold_12911 1901221 104 + 5364042
GGCGAGCGAGC-CACAA-ACAAAAAGAAGUCUCAAAAAAAUUAGACAGUUGCCAAGCUAGGCGCUAAGAUAAGCGCUUAUCUAUGUACCGUACUCUUCUCCGCGAA
((.(((.(((.-.((..-..........((((..........)))).(.(((..((.((((((((......)))))))).))..))).))).)))))).))..... ( -23.00, z-score =  -0.31, R)
>consensus
UGCAAACAAGUGCAGAAUACAAGAAAAAGGUAAGAAAAAAUUGAUCACUCGCCAAGCUAGGCGCUAAGCUAAGCGCUUAUCUAUUCACCGUAUUCUUGCACGUGUC
.....(((.(((((((((((..(((...(((............))).)))....((.((((((((......)))))))).)).......)))))).))))).))). (-19.89 = -20.20 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:08 2011