| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,274,222 – 2,274,318 |
| Length | 96 |
| Max. P | 0.638731 |
| Location | 2,274,222 – 2,274,318 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 64.43 |
| Shannon entropy | 0.60900 |
| G+C content | 0.43084 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -11.02 |
| Energy contribution | -10.66 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2274222 96 - 2517507 ----------------UAA-AGUGAUGUUAUCGUAA--GAUACCUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGG-UCACUUCAGCUAUAGUC ----------------..(-(((((...((((....--))))((.((.(.(((((...(((((((((.........))).)))))))))))).)).))-))))))........... ( -26.80, z-score = -1.89, R) >droSim1.chr2h_random 1701051 96 + 3178526 ----------------UAA-AGAGACGUUAUUGUAA--AAUAACUGCCGUAAAUAUAAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCUGUUGG-UCACUUCAGUUAUAGUC ----------------...-...(((((((((....--)))))).((((........((((((((((.........))).)))))))........)))-).............))) ( -21.49, z-score = -1.04, R) >droSec1.super_94 86622 95 - 93855 ----------------UAA-AGUGAAGUUAUCAUAA--AAUACCUAACGUG-AUAUCAAGUCGGAGCUACGACCCUGCUACCGACUUAUUCCAGUUGG-UCACUUAAGCUAUUGUC ----------------..(-(((((.(.((((((..--..........)))-))).)((((((((((.........))).)))))))...........-))))))........... ( -22.40, z-score = -2.11, R) >droYak2.chrU 4360279 113 + 28119190 UAAAGGCCCAUCAUCGUAAUCGAGUCUUUUAUUUAA--AAUAACCACUGUGAAUAUCAAGUCAGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGG-UCACUUGAGCUAUAGUC ....(((.((...(((....))).............--....(((((((.(((((...((((.((((.........))).).)))))))))))).)))-)....)).)))...... ( -21.30, z-score = -0.17, R) >droAna3.scaffold_13417 6601680 114 - 6960332 -UAAAGGCACCUUAUCUGAGACGGGUGUUUUCAUCGUUGUCAACCGCCGUAUA-GUAUAGCUGACGCUAAGACCCUGCUAUCAGCUUACUAGGAAAAGUUCAGCGGCAGCAUCAUC -.....((...........((((((((....))))..))))....(((((.((-(((.((((((.((.........))..)))))))))))(((....))).))))).))...... ( -29.20, z-score = -0.39, R) >consensus ________________UAA_AGAGACGUUAUCAUAA__AAUAACUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGG_UCACUUCAGCUAUAGUC .........................................................((((((((((.........))).)))))))............................. (-11.02 = -10.66 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:07 2011