| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,210,649 – 2,210,742 |
| Length | 93 |
| Max. P | 0.911975 |
| Location | 2,210,649 – 2,210,742 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 70.07 |
| Shannon entropy | 0.56783 |
| G+C content | 0.34678 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -12.66 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2210649 93 + 2517507 UAACGGAACUUAGUUACGAUU----GAAACAUAUGUACGUAGAUGCAAAGCGUUGUAUCUAUCAGUGUGUUGAUACGAAUAUAUAUGUAUUUGUCUG ((((........)))).(((.----((.(((((((((.((((((((((....))))))))))..((((....))))...))))))))).)).))).. ( -22.40, z-score = -1.21, R) >droYak2.chr2L_random 492067 93 + 4064425 UAACGGAACUUAGUUACGAUU----GAAACAUAUGUACGUAGAUGCAAAGCGUUGUAUCUAUCAGUGUGUUAAUACGAAUAUAUAUGUAUUUGUCUG ((((........)))).(((.----((.(((((((((.((((((((((....))))))))))..((((....))))...))))))))).)).))).. ( -23.10, z-score = -1.69, R) >droSec1.super_66 166458 93 - 176163 UAACGGAACUUAGUUACGAUU----GAAACAUAUGUACGUAGAUGCAAAGCGUUGUAUCUAUCAGUGUGUUGAUACGAAUAUAUAUGUAUUUGUCUG ((((........)))).(((.----((.(((((((((.((((((((((....))))))))))..((((....))))...))))))))).)).))).. ( -22.40, z-score = -1.21, R) >droSim1.chr2L 21886204 93 + 22036055 UAACGGAACUUAGUUACGAUU----GAAACAUAUGUACGUAGAUGCAAAGCGUUGUAUCUAUCAGUGUGUUGAUACGAAUAUAUAUGUAUUUGUCUG ((((........)))).(((.----((.(((((((((.((((((((((....))))))))))..((((....))))...))))))))).)).))).. ( -22.40, z-score = -1.21, R) >droVir3.scaffold_13047 4098760 88 + 19223366 -------UAAUAGAAAAUAUUUUUGUCGAGACAUGACCACAAAUAGGUA--GUCUUACUUGUGAGCAUGUUGAUACAUAUAUGUAUCUGCAUGGCUU -------.................((((.((((((..(((((.((((..--..)))).)))))..))))))((((((....))))))....)))).. ( -22.60, z-score = -2.27, R) >apiMel3.Group14 1690799 91 + 8318479 -UACGGAUCAUAGUUACCGUUCGCGGCAAUACACGUGUACGGGCAGAAACCGCUGUAUAUAUGUGUGUGUGUAUACACGUAUAUAUACGUAU----- -((((...........((((.((((........)))).))))...........(((((((((((((((....))))))))))))))))))).----- ( -29.80, z-score = -0.78, R) >consensus UAACGGAACUUAGUUACGAUU____GAAACAUAUGUACGUAGAUGCAAAGCGUUGUAUCUAUCAGUGUGUUGAUACGAAUAUAUAUGUAUUUGUCUG ............................(((((((((.(((((((((......)))))))))..((((....))))...)))))))))......... (-12.66 = -12.17 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:06 2011