| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,160,147 – 2,160,251 |
| Length | 104 |
| Max. P | 0.578604 |
| Location | 2,160,147 – 2,160,251 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 66.56 |
| Shannon entropy | 0.55029 |
| G+C content | 0.46073 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -14.44 |
| Energy contribution | -16.12 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2160147 104 + 2517507 UGUGCCUGCUCCCGACUUAGGUGUUAGUAUAUCUAAAGGUC--AGGACCU--UCCACCGAAAUGGCAAGACAAAGCUUAUCGGAAGAUUUAGCCCAGGAUGAUUGCAA ....((((.(((.(((((((((((....)))))))..))))--.))).((--((((......))).))).....(((.(((....)))..))).)))).......... ( -26.70, z-score = -0.50, R) >droSec1.super_18 1288856 108 - 1342155 UUUGCCUGCUCCCGACUUAGGUGUUAGUAUAUCUAAAGGUCCUGCGGCCAAGUCGACCGAAAUAGCAAGACAAAGCUUAUCGGAAGAUUUAGCCCAGGAUGAUUGCAA ......(((.......((((((((....))))))))..((((((.(((.(((((..((((...(((........)))..))))..))))).)))))))))....))). ( -36.70, z-score = -3.32, R) >droSim1.chrU 5329832 108 + 15797150 UGUGCCUGCUCCCGACUUAGGUGUUAGUAUAUCUAAAGGUCCUGAGGCCACAUCCACCGAAAUGGCAAGACAAAGCUUAUCGGAAUAUUUAGCCCAGGAUGAUUGCAA ......(((.......((((((((....))))))))..((((((.(((........((((...(((........)))..))))........)))))))))....))). ( -29.29, z-score = -0.95, R) >triCas2.chrUn_115 98607 101 + 112887 GGCGAUUCCUUUUGACCUAGACUUUGACGUGUUUGAAUCUC---AAGCAGGGUCUUCGAGAACAGC----UUCAGCUAUAGAUUCCAUUCGGAUCAAGACUCUUACCC (((((......))).))............((((((.....)---)))))(((((((.......(((----....)))...(((((.....))))))))))))...... ( -21.20, z-score = 0.56, R) >consensus UGUGCCUGCUCCCGACUUAGGUGUUAGUAUAUCUAAAGGUC__GAGGCCA_GUCCACCGAAAUAGCAAGACAAAGCUUAUCGGAAGAUUUAGCCCAGGAUGAUUGCAA ....((((.....(((((((((((....)))))))..))))....(((.(((((..((((...(((........)))..))))..))))).))))))).......... (-14.44 = -16.12 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:03 2011