| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,125,904 – 2,126,012 |
| Length | 108 |
| Max. P | 0.591094 |
| Location | 2,125,904 – 2,126,012 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.69 |
| Shannon entropy | 0.46085 |
| G+C content | 0.49132 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -18.95 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2125904 108 + 2517507 GGCCGGUCAGGACUACCGAAGUAAGAAUGGUGUGAGAGGCCGAUCAGGUCUACCAAAGUGAGAAAAGUUUGAGAGGCCGAUGAGGUCUACUAAAGAGAGAAUACUAGG ...((((.......)))).........((((((.(((((((.(((.(((((..((((.(......).))))..))))))))..))))).)).........)))))).. ( -26.50, z-score = -0.58, R) >droSec1.super_125 63580 108 - 73611 GGCCGGUCAGGUCUACCAAAGUGAUAAGAGUUGGAGAGGCCGGUCAGGUCUAACAAACUGAGAAGAGAUAGAGAGGCCGGUCUGGCCUACUAGAGUGAGAAGAGUUGG ((((((((...(((.((((..(.....)..)))))))))))))))....(((((...((....))...(((..(((((.....))))).)))...........))))) ( -31.60, z-score = -0.73, R) >droSim1.chr3L 3000950 107 - 22553184 GGCCGAUCGGGUCUGCCAAAGUAAGAAUGGUUUGAGGGGCCGGGUAGGUCUACCAAAAUGAAAAGAGUUUGAGAGGCCGAUCAGGUCUGC-AAAGUGAGAAUAGUUGG ((((.(((.(((((..((((.((....)).))))..))))).))).))))..((((.........(.((((..(((((.....))))).)-))).)........)))) ( -31.53, z-score = -1.58, R) >droEre2.scaffold_4929 2326471 95 - 26641161 GGCCUUUCAGGUCUACCAAGGUGAAAAUGGUUUGAGAGGCCUUUUAAGUCUAUCAAAGUGAGAACGGUUUGAGAGGUCUUUUAGGUCUCCAAAGG------------- ((((.....))))(((....))).....(..((((((((((((((((..(..((.....))....)..))))))))))))))))..)........------------- ( -28.30, z-score = -1.19, R) >consensus GGCCGGUCAGGUCUACCAAAGUAAGAAUGGUUUGAGAGGCCGGUCAGGUCUACCAAAGUGAGAAGAGUUUGAGAGGCCGAUCAGGUCUACUAAAGUGAGAAUAGUUGG ((((.....(((((..((((.(......).))))..))))).....(((((..((((.(......).))))..))))).....))))..................... (-18.95 = -19.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:02 2011