| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,105,677 – 2,105,728 |
| Length | 51 |
| Max. P | 0.975159 |
| Location | 2,105,677 – 2,105,728 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 73.70 |
| Shannon entropy | 0.40353 |
| G+C content | 0.35210 |
| Mean single sequence MFE | -10.22 |
| Consensus MFE | -7.38 |
| Energy contribution | -7.50 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.975159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2105677 51 - 2517507 ----CGGGAGAAUAGACGUUGA--UAACUUUAUUCUCUUAAACUUCG-CUCUUAAGCU ----.(((((((((((.((...--..))))))))))))).......(-((....))). ( -12.00, z-score = -2.22, R) >droSim1.chrU 9067537 51 - 15797150 ----CGGGAGAAUAAACGUUGA--UAACCUUAUUCUCUUAAACUUCG-CUCUUAAGCU ----.((((((((((..((...--..)).)))))))))).......(-((....))). ( -9.70, z-score = -1.78, R) >droSec1.super_62 130368 51 - 174595 ----CGGGAGAAUAAACGUUGA--UAACUUUAUUCUCUUAAACUUCG-CUCUUAAGCU ----.(((((((((((.((...--..))))))))))))).......(-((....))). ( -11.90, z-score = -3.03, R) >droMoj3.scaffold_6498 2411771 58 - 3408170 UAAUAAAGAGGAGGAAUUUUAAACCCACGUUAUUUUCUUUAUUAUCGACGCUUACACU ((((((((((((..(((...........))).)))))))))))).............. ( -7.30, z-score = -0.97, R) >consensus ____CGGGAGAAUAAACGUUGA__UAACUUUAUUCUCUUAAACUUCG_CUCUUAAGCU .....(((((((((((.(((.....))))))))))))))................... ( -7.38 = -7.50 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:02 2011