| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,103,387 – 2,103,475 |
| Length | 88 |
| Max. P | 0.561752 |
| Location | 2,103,387 – 2,103,475 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 51.52 |
| Shannon entropy | 0.89166 |
| G+C content | 0.44094 |
| Mean single sequence MFE | -19.99 |
| Consensus MFE | -8.14 |
| Energy contribution | -7.58 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.36 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2103387 88 - 2517507 UGGAUAUGUUACUUUCCCAUCCUUAAGAAAAAAAGCCUGUCCUCAGGCGUUUAGAUUAGGUUACAAUACAGGGGUAUUGGGGGUGCGG------- ...............((((((((...........(((((....)))))...............((((((....)))))))))))).))------- ( -22.60, z-score = -0.24, R) >droVir3.scaffold_12730 152392 87 + 231274 UGCGGAUGUCACUUCCCGAUUCCUAUG-AAAUUAGCGUGACCUCAGGCGGAGAUUUGUGGGUAUAAUGUUGGAUUAUUGCUAGUUUUA------- ...(((.(((.......))))))..((-(((((((((..((((((((......)))).))))(((((.....))))))))))))))))------- ( -16.30, z-score = 1.25, R) >droPer1.super_86 190427 93 - 225837 UAGAUAUGUCACUCCCCCUUUGUUAG--AUUUAAGCCUGUCCUCAGGCGAUUAUCCUUGGAUAUAGUUCAGGUGCGUCUAAAACUGUGCCUGCUG ....((((((((.........))..(--((....(((((....)))))....)))....))))))...((((..((........))..))))... ( -21.70, z-score = -1.17, R) >dp4.Unknown_group_463 1595 91 - 6425 UUUGUAUGUCACUCCCCCAACGUUUG--UCAUUAGCCUGUCCCUAGGCGAUUACCCUCGGGUAUAGUGACGGU--GUCAAGUGCGGUGGCUGGAU .......((((((..........(((--(((((((((((....)))))...((((....))))))))))))).--.........))))))..... ( -26.35, z-score = -0.16, R) >droYak2.chrU 16083841 70 + 28119190 --UGAAUAUCCCCCACCUU---UUAG--AUAUUAGCUUGUCUUCAAGCGAUUAUUUCUGGAUAUAAAUGUGGUACUG------------------ --..........((((..(---((((--(.((..(((((....)))))....)).)))))).......)))).....------------------ ( -13.00, z-score = -1.47, R) >consensus UGGGUAUGUCACUCCCCCAUCCUUAG__AAAUUAGCCUGUCCUCAGGCGAUUAUCUUUGGAUAUAAUGCAGGUGCAUCGAGAGCGGUG_______ ...............((.................(((((....)))))...((((....)))).......))....................... ( -8.14 = -7.58 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:01 2011