| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 2,102,062 – 2,102,127 |
| Length | 65 |
| Max. P | 0.989461 |
| Location | 2,102,062 – 2,102,127 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 68.28 |
| Shannon entropy | 0.54563 |
| G+C content | 0.41134 |
| Mean single sequence MFE | -11.97 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.73 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 2102062 65 + 2517507 UAGCCGCUGCAAACCGUAGCGAGCGAAAUAA-GAAAAUCAGUUCGUUACAACACAAACAGUCACUA (((..((((......(((((((((.......-........)))))))))........))))..))) ( -13.60, z-score = -2.10, R) >droSim1.chrU 8754298 52 + 15797150 UAGCCGCUGCAAACAGUAGCGAGCGAAAUAAAGAAAAUCAGUUCGUUACAAC-------------- ..((((((((.....)))))).))........(((......)))........-------------- ( -12.20, z-score = -2.57, R) >droSec1.super_41 189365 60 - 296808 UAGCCUUUGCGAUUCGUAGCGAGCAAAAAUA-GAAAAUCAGUUCGUUACAAUACUUUACUA----- ..((....)).....(((((((((.......-........)))))))))............----- ( -11.56, z-score = -1.57, R) >droEre2.scaffold_4929 25385204 53 + 26641161 UAGCCGUUGCAAUUCGUAGCGAGCAGAACCAAGGAAAACAGUUCGUUACAUCA------------- ..((((((((.....)))))).)).((((...........)))).........------------- ( -11.50, z-score = -1.90, R) >droAna3.scaffold_13079 548995 60 - 742402 UAGCCGCGGCG-UUUGUUGCGAGCAAAACAUAGCAAAACAGUUCGUUACAGUAUAUAUAUU----- ..((....)).-.((((.((((((................)))))).))))..........----- ( -10.99, z-score = 0.01, R) >consensus UAGCCGCUGCAAUUCGUAGCGAGCAAAACAAAGAAAAUCAGUUCGUUACAACA_____________ ..((....)).....(((((((((................)))))))))................. (-11.53 = -11.73 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:00 2011