| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,969,413 – 1,969,489 |
| Length | 76 |
| Max. P | 0.690206 |
| Location | 1,969,413 – 1,969,489 |
|---|---|
| Length | 76 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 55.70 |
| Shannon entropy | 0.74713 |
| G+C content | 0.49063 |
| Mean single sequence MFE | -16.00 |
| Consensus MFE | -4.40 |
| Energy contribution | -4.33 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1969413 76 - 2517507 UAAUAUCAUCGGCCACGACCCGGUGCUCAGUAUCCCUCUGUUGCACAGACUGAACAGUGAAAACUUGCGCUCCAUC ........(((....)))...((.((.((((.((..((((.....))))..))))(((....))))).)).))... ( -15.10, z-score = -0.16, R) >dp4.Unknown_group_128 17302 66 + 26480 CAACGUCACCUGGCACCAAACUCUGCUGAGCCUGCCAUACCUCCACAAACUCAGCGACGAAAAAUU---------- ...((((...((....))......((((((..((...........))..)))))))))).......---------- ( -14.50, z-score = -3.22, R) >droPer1.super_84 77208 76 - 236437 CAACGCCACCCGGCACCAAACUCUGCUGAGCGUGCCAUACCUCCACAAACUCAGCGAGGAAAAUUUGGAACGCAUC ....(((....))).((((((((.((((((..((...........))..))))))))).....)))))........ ( -20.10, z-score = -2.18, R) >droSec1.super_64 152032 76 + 179039 AAACAUCAUCGGGUAUAAUCACGUAUUGAGUAUGCCACUACUCUAGAGUAUUAACGGUCUAAACCGUCAAGUAAUC ...........((((((.(((.....))).))))))..((((....))))...(((((....)))))......... ( -14.30, z-score = -1.25, R) >consensus CAACAUCACCGGGCACCAAACUCUGCUGAGCAUGCCACACCUCCACAAACUCAACGAUGAAAACUUGCAA__CAUC ....(((....))).........(((((((...................))))))).................... ( -4.40 = -4.33 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:57 2011