| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,958,658 – 1,958,737 |
| Length | 79 |
| Max. P | 0.998996 |
| Location | 1,958,658 – 1,958,737 |
|---|---|
| Length | 79 |
| Sequences | 3 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 59.75 |
| Shannon entropy | 0.57803 |
| G+C content | 0.41352 |
| Mean single sequence MFE | -18.49 |
| Consensus MFE | -10.13 |
| Energy contribution | -9.69 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.59 |
| SVM RNA-class probability | 0.998996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1958658 79 + 2517507 UAGCCGCUGCAAUCCGUAGCGAGUGAAAAUAAAAAAAUCAGUUCGUUACAA--AGCUUUGUUGUGAGUUUGUCUAGGCAAA ..(((...((.....(((((((((((...........))).)))))))).(--(((((......))))))))...)))... ( -19.70, z-score = -2.08, R) >droSim1.chrU 2501292 81 - 15797150 UAGCCGCUGCAAUCAGUAGCGAGCGAAAUAAAGAAAAUCAGUUCGUUACAUCUGGCGCCCAAACGUGAUUGUCCGGGCAAA ..(((...((((((.(((((((((................))))))))).....(((......)))))))))...)))... ( -24.79, z-score = -2.24, R) >droEre2.scaffold_4929 23417816 60 + 26641161 UAGCCGUUUCAAUUCGUAACGAGCAGAACCCAGAAAAACAGUUCGUUACAA--UUCAUUAUU------------------- ...............(((((((((................)))))))))..--.........------------------- ( -10.99, z-score = -3.70, R) >consensus UAGCCGCUGCAAUCCGUAGCGAGCGAAAAAAAGAAAAUCAGUUCGUUACAA__AGCAUUAUU__G_G_UUGUC__GGCAAA ...............(((((((((................)))))))))................................ (-10.13 = -9.69 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:57 2011