| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,946,971 – 1,947,025 |
| Length | 54 |
| Max. P | 0.841574 |
| Location | 1,946,971 – 1,947,025 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 61.31 |
| Shannon entropy | 0.55147 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -5.10 |
| Energy contribution | -5.33 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1946971 54 + 2517507 CCUGUGCAGUGCACGAACUGCCAAGAAUAUGGACACCAAAGUGUA--CUGCACUCU ...(((((((((((....(((((......))).)).....)))))--))))))... ( -22.60, z-score = -4.71, R) >anoGam1.chr3R 30267221 56 + 53272125 CCAAUGCAGUGUACAAACUGCCAGCGCUACGGACAUGGUAGCGCAAACUGUUAUCU .....(((((......)))))..(((((((.......)))))))............ ( -19.00, z-score = -2.29, R) >triCas2.singleUn_1324 1690 56 + 6015 AUUUCUCAGUGUUACCGCUGCCAGGCCUUUGGACAUGGAAGUGGAACCUGUAACCU ......(((.(((.(((((.(((..((...))...))).)))))))))))...... ( -16.50, z-score = -1.26, R) >consensus CCUAUGCAGUGUACAAACUGCCAGGACUAUGGACAUGGAAGUGCAA_CUGUAAUCU .....(((((......)))))....(((((.......))))).............. ( -5.10 = -5.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:56 2011