| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,843,440 – 1,843,495 |
| Length | 55 |
| Max. P | 0.598640 |
| Location | 1,843,440 – 1,843,495 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 51.91 |
| Shannon entropy | 0.65078 |
| G+C content | 0.57017 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -8.77 |
| Energy contribution | -7.67 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1843440 55 - 2517507 ---------AGCCUUUUUGGUCCUCGCAGUCUCCAGGAUCUCAGGCUCCGUGACCGGCCUAAAU ---------(((((....((((((.(......).))))))..)))))(((....)))....... ( -13.80, z-score = -0.19, R) >droAna3.scaffold_12905 207208 55 + 569613 ---------GGCUUUACUGGGGGCUCCAACACCCUUCCUCCUGGGUUUCGCCACCGGUCGAAAU ---------...((.(((((.(((......((((........))))...))).))))).))... ( -15.90, z-score = 0.06, R) >droSec1.super_17 260490 64 - 1527944 CGCCUUUCUGGUUUUGAGGCUUCUUGCAGCCGCCAGAAUCUUGGGCUACGUGACCGACCGUAAU .((((....(((((((.((((......))))..)))))))..))))((((........)))).. ( -20.40, z-score = -1.44, R) >consensus _________GGCUUUAAUGGUCCUUGCAGCCCCCAGAAUCUUGGGCUACGUGACCGGCCGAAAU .........((((.....((((((.(......).))))))...((........))))))..... ( -8.77 = -7.67 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:53 2011