| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,794,075 – 1,794,130 |
| Length | 55 |
| Max. P | 0.976955 |
| Location | 1,794,075 – 1,794,130 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 70.97 |
| Shannon entropy | 0.59162 |
| G+C content | 0.39937 |
| Mean single sequence MFE | -10.43 |
| Consensus MFE | -6.03 |
| Energy contribution | -5.91 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1794075 55 + 2517507 UCGCAACAGCUAUUGAAAAAGCUUAAUAGCUAAACAUG--GGUGACCCCGACGUGAU ((((...(((((((((......))))))))).....((--((....))))..)))). ( -16.60, z-score = -3.71, R) >droYak2.chr2R 266281 57 + 21139217 GCAAAAAGGCUAAUACAAAUUCUUAUUAGCUCAAUAUUUUGGUGACCCCGACUGGAU .......((((((((........))))))))......((..((.......))..)). ( -8.80, z-score = -0.47, R) >droAna3.scaffold_13230 2632856 53 + 3602488 -UGAAACGGC-ACUGAAAAAUAUCAAUGUCCAAACAUU--AGUGACUCCGAUGUGAU -......(((-(.(((......))).))))...((((.--.(.....)..))))... ( -7.60, z-score = -0.54, R) >dp4.Unknown_group_284 5826 56 - 17202 UUGCAACAUUUAUUAAAAACGCUUAAUAGCUUAACAUU-UGGUAACCCCGACGUGAU ....................(((....)))....((((-(((.....)))).))).. ( -5.50, z-score = 0.01, R) >droPer1.super_86 131328 56 - 225837 UUGCAACAGUUAUUAAAAACGCUUAAUAGCUUAACAUU-UGGUGACCCCGACGUGAU .......(((((((((......)))))))))...((((-(((.....)))).))).. ( -9.00, z-score = -0.93, R) >droVir3.scaffold_13050 2859522 56 - 3426691 UUGUGAAAGCUAUUGAAAAAGCUCAAUAGCGCAACAUU-UGGUGACCCCGACGUGAU ...((...((((((((......)))))))).)).((((-(((.....)))).))).. ( -13.80, z-score = -2.34, R) >droGri2.scaffold_14948 4372 51 + 44767 ----UAAAGCUAUCAAAAAGC--UGAUAGCGCAAACCUCUGGUGACCCCGACGUGAU ----....(((((((......--)))))))....((.((.((....)).)).))... ( -11.70, z-score = -2.44, R) >consensus UUGCAACAGCUAUUAAAAAAGCUUAAUAGCUCAACAUU_UGGUGACCCCGACGUGAU .......(((((((((......))))))))).......................... ( -6.03 = -5.91 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:47 2011