| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,255,535 – 6,255,652 |
| Length | 117 |
| Max. P | 0.650320 |
| Location | 6,255,535 – 6,255,652 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.82 |
| Shannon entropy | 0.10789 |
| G+C content | 0.46089 |
| Mean single sequence MFE | -31.34 |
| Consensus MFE | -27.74 |
| Energy contribution | -27.82 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6255535 117 + 23011544 UCGUCGUAAUCAGGUGGCGUCAAUCGGACCGCUAAAUGGUUUGAGAUCAUUAUUCACACGCUCAGAACAACAAAA---CUGGUGUCAUUCAACCUCGGGGCCGCUUGUUUAGCGAACAUC ...((((...((((((((.((..((((((((.....)))))))).............((((.(((..........---)))))))...........)).))))))))....))))..... ( -32.30, z-score = -1.38, R) >droSim1.chr2L 6053467 117 + 22036055 UCGUCGUAAUCAGGUGGCGUCAAUCGGACCUCUAAAUGGUUUGAGAUCAUUAUUCACACGCUCAGAACAACAAAA---CUGGUGUCAUUCAACCUCGGGGCCGCUUGUUUAGCGAACAUC ...((((...((((((((.((..(((((((.......))))))).............((((.(((..........---)))))))...........)).))))))))....))))..... ( -32.50, z-score = -1.80, R) >droSec1.super_5 4326647 117 + 5866729 UCGUCGUAAUCAGGUGGCGUCAAUCGGACCUCUAAAUGGUUUGAGAUCAUUAUUCACACGCUCAGAACAACAAAA---CUGGUGUCAUUCAACCUCGGGGCCGCUUGUUUAGUGAACAUC ...((((((.((((((((.((..(((((((.......))))))).............((((.(((..........---)))))))...........)).)))))))).))).)))..... ( -30.50, z-score = -1.13, R) >droYak2.chr2L 15671591 120 - 22324452 UCGUCUUAAUCAGGUGGCGUCAAUCAGACCGCUAAAUGGUUUGAGAUCAUUAUUCACACGCUCAGAACAAAAAAAAAACUGGUGUCAUUCAACCUCGGGGUCGCUUGUUUAGCGAACAUC ((((..(((.((((((((.((..((((((((.....)))))))).............((((.(((.............)))))))...........)).)))))))).)))))))..... ( -30.02, z-score = -1.71, R) >droEre2.scaffold_4929 15182666 115 + 26641161 UCGUCAUAAUCAGGCGGCGUCAAUCAGAGCGCUAAAUG-UUUGAGAUCAUUAUUCACACGCUCAGAACAAAAAA----CUUGUGUCAUUCAACCUCGGGGCCGCUUGUGUUGCGAACAUC ((((.(((..((((((((.((.....(((((...((((-..((....)).))))....))))).((((((....----.)))).))..........)).))))))))))).))))..... ( -31.40, z-score = -1.58, R) >consensus UCGUCGUAAUCAGGUGGCGUCAAUCGGACCGCUAAAUGGUUUGAGAUCAUUAUUCACACGCUCAGAACAACAAAA___CUGGUGUCAUUCAACCUCGGGGCCGCUUGUUUAGCGAACAUC ((((..(((.((((((((.((..(((((((.......))))))).............((((.(((.............)))))))...........)).)))))))).)))))))..... (-27.74 = -27.82 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:50 2011