| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,788,382 – 1,788,483 |
| Length | 101 |
| Max. P | 0.829812 |
| Location | 1,788,382 – 1,788,483 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 52.27 |
| Shannon entropy | 0.67394 |
| G+C content | 0.54249 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.30 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1788382 101 + 2517507 -----AUGCCCAAGAUCCCAUCGUACAUAAUGUUCCAUAGGAUUGGUCCAAGUACCGAUCCUUGGGGAACACCUGCCGAAACUCGGUAUCUUUUUGGGCAAUCUUC -----.(((((((((...............((((((..(((((((((......)))))))))...))))))..(((((.....)))))...)))))))))...... ( -40.90, z-score = -5.08, R) >droVir3.scaffold_13050 2815172 93 - 3426691 AUUGCACUCUGAGCACCUCGUCAAACAUUAUGUUUCACAGGAGUGGUCCCAAGACCGACCCCUGUGGCUCCCCUGCUGAGACCAUGUAGACCA------------- .(((((.(((.((((.......((((.....))))((((((.((((((....)))).)).)))))).......)))).)))...)))))....------------- ( -27.50, z-score = -1.72, R) >triCas2.chrUn_30 5958 96 + 281566 CGUCGAGAUGUAGCACCUCGUCGUAAACGAAGUUCCAGAGGAGCGGGCCCAGUACCGACCCCUGGGGCACUCCACAUGUCGCGUUGAAACCGUCGC---------- ((.(((.((((......((((.....)))).(((((((.((..(((........)))..))))))))).....)))).))))).............---------- ( -30.50, z-score = -0.07, R) >consensus __U__ACACCCAGCACCUCGUCGUACAUAAUGUUCCACAGGAGUGGUCCCAGUACCGACCCCUGGGGCACACCUGCUGAAACCAUGUAACCCU_____________ ...............................((.((.((((..(((........)))...)))).)).)).................................... ( -8.40 = -8.30 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:46 2011