| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,674,023 – 1,674,139 |
| Length | 116 |
| Max. P | 0.505533 |
| Location | 1,674,023 – 1,674,139 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 66.99 |
| Shannon entropy | 0.61781 |
| G+C content | 0.56539 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -11.07 |
| Energy contribution | -11.35 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1674023 116 - 2517507 ACAUGCACUCGAACUCUGCCGUCGUGCUGCUCUCAGACAUGGCACCCUUUCACUGAAAAAUGGCAGGUUAUUCGCGGCAUCACU--CACU-CCGACGCCGCGGGCCUAGAUUCCAAUGG .(((....((.(((.((((((((((((((....))).))))))....((((...))))...)))))))).((((((((.((...--....-..)).))))))))....)).....))). ( -34.80, z-score = -1.22, R) >droSim1.chrU 2779178 109 - 15797150 ----------AACAUCUGCGUCGUCGCUCCACUCAUAGCUGACGACGUUUCACUCAUACUUAGCGGUGUAUUCGCCGCACCGUUACCGUUACCGAUACCGCUCAACCCGAUUCCAACGG ----------(((....(((((((((((........))).))))))))..............((((((....))))))...))).(((((...((...((.......))..)).))))) ( -29.50, z-score = -2.46, R) >droSec1.super_57 142743 115 + 261249 ----UUACUCAACAUUUUCGUCGUCGCUUCACUCAUAGCUGACGACGUUUCACUCAUACUUAGCGGUGUAUUCGCCGCACCGUUACCGUUACCGUUACCGCUCAACCCGAUUCCAACGG ----......(((.....((((((((((........))).))))))).............(((((((((.......)))))))))..))).(((((.....((.....))....))))) ( -29.80, z-score = -3.30, R) >droYak2.chrU 7176617 116 + 28119190 GCUCUCACUCGAGCCCUGCCGUGGUGCUGCUCUCAGACAUGGCACCGUUUCACUCAAACAUGGCGGUGUAUUCGCCGUACCGCU--CACU-CCAACGCCGCGUGCCCCGACUCCAACGG ((((......))))..(((((((...(((....))).)))))))(((((....((......(((((.....)))))((((.((.--....-........))))))...))....))))) ( -33.72, z-score = -0.34, R) >droEre2.scaffold_4845 974866 116 - 22589142 GUUCUCACUCGAACCCUGCCGUGCUGUUGCUCUCAGACAUGGCGCCAUUUCACUCAAACAUGGCGGUGUAUUCUCCGCACCGCU--CACU-CCGAUGCCGCGUGCCCUGAUUUCAACGG ((((......)))).........((((((...((((....(((((.....((.((......((((((((.......))))))))--....-..))))....)))))))))...)))))) ( -30.00, z-score = -0.46, R) >droAna3.scaffold_12911 4274719 107 + 5364042 AUUUUCACUCAAGAUCUGCCUCACCGUUGCGCUCUAGCAUGGCGCCUCUCC---------UAGCGGUGUAUUCGCCGCACCGCU--CACU-CCGACGCCAAUCGACAGGAUCCUAACGG ............(((((...((.....(((......)))(((((.......---------.((((((((.......))))))))--....-....)))))...))..)))))....... ( -29.29, z-score = -1.15, R) >consensus __U_UCACUCAAAAUCUGCCGCGCCGCUGCUCUCAGACAUGGCGCCGUUUCACUCAAACAUAGCGGUGUAUUCGCCGCACCGCU__CACU_CCGACGCCGCGCGACCCGAUUCCAACGG .....................(((((((............)))))))..............((((((((.......))))))))................................... (-11.07 = -11.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:44 2011