| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,640,232 – 1,640,367 |
| Length | 135 |
| Max. P | 0.988070 |
| Location | 1,640,232 – 1,640,367 |
|---|---|
| Length | 135 |
| Sequences | 4 |
| Columns | 136 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.40995 |
| G+C content | 0.44205 |
| Mean single sequence MFE | -39.10 |
| Consensus MFE | -30.11 |
| Energy contribution | -29.30 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.988070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1640232 135 - 2517507 GGGAUAUGAUGCAACAGGUAGUUAGACGC-UUGGAUCGACAGAGGAGAUAAUUAUUAUUAGUUGUCCCUCUGGCCACGGAUAUCCAGUCUGUGCUAAGAACCCAGCUUCAUUAUAGAACAACGAAUAAAAUAGCUU (((.......((..(((((........))-)))......((((((.((((((((....))))))))))))))))(((((((.....))))))).......)))((((...((((..........))))...)))). ( -37.50, z-score = -2.12, R) >droSim1.chr2h_random 2811110 133 - 3178526 GGGAUCCGAAGUAACGGCUAGUUAGACGC-UUGGAUCGACAGAGGGGAUAAUUAUUAUUAGUUGUCUCUCUGGCCACGGAUAACUAGUCUGUGCC-AGAACAGAGCUUCAACAUAUAACAACGAA-AAAAUAGCGU .......(((((...(((((((((..((.-.(((.....(((((((.(((((((....)))))))))))))).)))))..)))))))))(((...-...)))..)))))................-.......... ( -38.70, z-score = -2.39, R) >droSec1.super_72 57510 133 - 149286 GGGAUCCGACGUAACGGCUAGUUAGACGC-UUGGAUCGACAGAGGGGAUAAUUAUUAUUAGUUGUCUCUCUGGCCACGGAUAACUAGUCUGUGCC-AGAACCCAGCUUCAACAUAUAACAACGAA-AAAAUAGCGU ..(((((((((((((.....)))..))).-)))))))......(((((((((((....))))))))..((((((.((((((.....)))))))))-))).))).(((..................-.....))).. ( -41.10, z-score = -2.75, R) >droYak2.chrU 13779159 133 + 28119190 GGGAUUUGCAGCAAAGAUUAAUUAUGCGCGUUGGACUGACAGGCGAUAGAGUUAUAAGUAACUCAACUCCUGGCCACGGAUAAUUAGUCUGAGCUAUGGACUCCAAUU---UGUUUACGGUCGAACGGCGUCGCGU ((..(((..(((..(((((((((((.((...(((.....((((.(...((((((....))))))..).)))).))))).)))))))))))..)))..)))..))....---.....((((.((.....)).).))) ( -39.10, z-score = -1.16, R) >consensus GGGAUCCGAAGCAACGGCUAGUUAGACGC_UUGGAUCGACAGAGGAGAUAAUUAUUAUUAGUUGUCCCUCUGGCCACGGAUAACUAGUCUGUGCC_AGAACCCAGCUUCAACAUAUAACAACGAA_AAAAUAGCGU (((.((....(((..(((((((((..((...(((.....((((((.((((((((....)))))))))))))).)))))..)))))))))..)))...)).)))................................. (-30.11 = -29.30 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:40 2011