| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,596,577 – 1,596,680 |
| Length | 103 |
| Max. P | 0.783602 |
| Location | 1,596,577 – 1,596,680 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 52.42 |
| Shannon entropy | 0.64711 |
| G+C content | 0.44810 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -11.18 |
| Energy contribution | -10.87 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1596577 103 - 2517507 AAUUGGUGUUGUAGGUCUGAUGGAGUUGGGCGCCAAAUAUCUAAUCCUGUCCUGCGUCUAUAUAGGAGGCGUGGCAGGUUGAA--GUAGUCCAUCGGCAUUAGCU-------- ..(((((((((..((.(((.((((.((((...))))...))))..((((((.(((.(((.....))).))).)))))).....--.))).))..)))))))))..-------- ( -32.90, z-score = -1.25, R) >droSim1.chrU 11670338 105 - 15797150 AAUUGGUUUUGUAGGCCUGAUGGAGUUAGGCCUCAAAUAUCUAAUCCUGUCCCGCGUCGAUGUAGGAAGCGUGGCAGGUUGAAGUGUAGUCCAGCGACGUUAGCU-------- .(((((.((((.(((((((((...)))))))))))))...)))))((((((.(((.((.......)).))).))))))....(((...(((....)))....)))-------- ( -34.80, z-score = -2.07, R) >droWil1.scaffold_181141 1346284 110 - 5303230 AUGUACUCUUGUAUAUCU-ACACAUUCUGAUGCCCGUAACCGAAGUAACUGUUUAAACAAGCUAAUUUUUCUUGUCGGCCCA--UGUGGCUGAUAUACGUUAUAAUGAUGAAU ((((((....))))))..-.((((((.(((((.........((((.....((((....)))).....)))).((((((((..--...))))))))..))))).)))).))... ( -21.70, z-score = -1.20, R) >consensus AAUUGGUCUUGUAGGUCUGAUGGAGUUAGGCGCCAAAUAUCUAAUCCUGUCCUGCGUCAAUAUAGGAAGCGUGGCAGGUUGAA_UGUAGUCCAUCGACGUUAGCU________ .........(((.(((((((.....))))))).............((((((.(((.((.......)).))).))))))..................))).............. (-11.18 = -10.87 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:37 2011