| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,246,255 – 6,246,310 |
| Length | 55 |
| Max. P | 0.985081 |
| Location | 6,246,255 – 6,246,310 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 91.77 |
| Shannon entropy | 0.14759 |
| G+C content | 0.38524 |
| Mean single sequence MFE | -12.21 |
| Consensus MFE | -11.36 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6246255 55 + 23011544 CUAAAAAAGCGUUUUAAAAGUACAGCAAAAACGGGUUGAGCAAAAGAAAGCGCUG .......((((((((....((.((((........)))).)).....)))))))). ( -13.20, z-score = -2.42, R) >droSim1.chr2L 6044300 54 + 22036055 CUAAAAAAGCGUUUUAAAAGUACAGCAAAAA-GGGUUGAGCAAAAGGAAGCGCUG .......((((((((....((.((((.....-..)))).)).....)))))))). ( -13.30, z-score = -2.79, R) >droSec1.super_5 4317397 54 + 5866729 CUAAAAAAGCGUUUUAAAAGUACAGCAAAAA-GGGUUGAGCAAAAGGAAGCGCUG .......((((((((....((.((((.....-..)))).)).....)))))))). ( -13.30, z-score = -2.79, R) >droYak2.chr2L 15662048 54 - 22324452 -CUAAAAAGCGUUUUAAAAGUAGAGCAAAAAAGGGUUGAGUAAAAGGAAGCGCUG -......((((((((........(((........))).........)))))))). ( -8.73, z-score = -1.29, R) >droEre2.scaffold_4929 15172753 53 + 26641161 CUAAAAUAGCGUUUUAAAAGUACGGCAAAAA-GGGUUGAGUAAA-GGAAGCGCUG ......(((((((((.....(((..(((...-...))).)))..-.))))))))) ( -12.50, z-score = -2.68, R) >consensus CUAAAAAAGCGUUUUAAAAGUACAGCAAAAA_GGGUUGAGCAAAAGGAAGCGCUG .......((((((((....((.((((........)))).)).....)))))))). (-11.36 = -11.00 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:49 2011