| Sequence ID | dm3.chr2L |
|---|---|
| Location | 624,369 – 624,473 |
| Length | 104 |
| Max. P | 0.945026 |
| Location | 624,369 – 624,473 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 89.42 |
| Shannon entropy | 0.19785 |
| G+C content | 0.39802 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -20.03 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 624369 104 - 23011544 UUUAAGAUUUAUUAACCUCAUACCAGCUGCUUUGCAGACGUGGUGUUGUUAGUACAUUUGAUCUUGUUUUCCCAGCGAUUCAUAUUGCAUUGGAGAGACACAAG ....((((.(((((((...(((((((((((...)))).).)))))).))))))).))))...(((((((((((((((((....)))))..))).)))).))))) ( -28.70, z-score = -3.13, R) >droSim1.chr2L 630981 104 - 22036055 UUUAAGAUUUAUUAACCUCAGACCAGCUGCUUUGCAGCCGACGUGUUGUUAGUACAUUUGCUCUUGUUUUCCCAGCGAUUCAUAUUGCAUUGGAGAGACACAAG ....((((.(((((((..((...(.(((((...))))).)...))..))))))).))))...(((((((((((((((((....)))))..))).)))).))))) ( -26.40, z-score = -2.36, R) >droSec1.super_14 606879 101 - 2068291 UUUAAGAUUUAUUAACCUCAGACCAGCUGCUUUGCAGUCGUCG---UGUUAGUACAUUUGAUCUUGUUUUCCCAGCGAUUCAUAUUGCAUUGGAGAGACACAAG ....((((.(((((((....(((..(((((...))))).))).---.))))))).))))...(((((((((((((((((....)))))..))).)))).))))) ( -26.40, z-score = -2.85, R) >droYak2.chr2L 614113 104 - 22324452 UUGAAGAUUUAUUAACCUCAAACCAGGUGGUUUUUAGCCGUCCUGCUGUUAGUACAUUUGAUCUUGUUUUCCCAGCGAUUCAUGUUGCAUUGGAGAGACACAGA ....((((.(((((((.......((((((((.....)))).))))..))))))).))))..((((((((..((((((((....)))))..)))..))))).))) ( -26.40, z-score = -1.76, R) >droEre2.scaffold_4929 682282 102 - 26641161 UUAAAGAUUUAGUAACCACAAACCAGCUGCUUUGCAGCGGUCUUGUUGUUAGUACAUUUGAUCUUGUUUUCCCAGCGAUUCAUAUUGCAUUGGAGACACAGA-- ....((((.((.((((.(((((((.(((((...)))))))).)))).)))).)).))))..((((((((((...(((((....)))))...))))))).)))-- ( -29.30, z-score = -3.15, R) >consensus UUUAAGAUUUAUUAACCUCAAACCAGCUGCUUUGCAGCCGUCGUGUUGUUAGUACAUUUGAUCUUGUUUUCCCAGCGAUUCAUAUUGCAUUGGAGAGACACAAG ...(((((((((((((.........(((((...))))).........))))))).....))))))((((..((((((((....)))))..)))..))))..... (-20.03 = -20.27 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:23 2011