| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,527,585 – 1,527,672 |
| Length | 87 |
| Max. P | 0.507188 |
| Location | 1,527,585 – 1,527,672 |
|---|---|
| Length | 87 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 60.82 |
| Shannon entropy | 0.54259 |
| G+C content | 0.32088 |
| Mean single sequence MFE | -17.03 |
| Consensus MFE | -9.09 |
| Energy contribution | -7.77 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.507188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1527585 87 - 2517507 GCGGUGACCGUUGUGUUGAAGGGGAGAGAUUCUUGUGAGGUAGAGAAGGCCUUUU---UCCUUCUCAAGAUUGUGUACUUGAACUCCUUU ((((...))))......(((((..((((.(((((........)))))...)))).---.)))))(((((........)))))........ ( -22.50, z-score = 0.02, R) >droSim1.chrU 5723869 88 - 15797150 UCGAAUAUCG--GUACGAAAAGGAAUUUGCGUAUUUAUUUUAGAAUGCUCCUUUUCAAUUUUAUUCAUAACUUUAUUUUCAAAUUCUUUU ..(((((...--....((((((((......((((((......)))))))))))))).....)))))........................ ( -13.90, z-score = -1.65, R) >droYak2.chrU 26436171 87 + 28119190 UCGAAUAUCG--GUUCGAAAAGGGAUUUGCAUAUUUAUUUUAGAGUGCUCCUUUUCAAUUUUAUUCAUAAUUUUAUUUUCGAAAUUUUU- ..(((((..(--(((.((((((((....((((.((......)).)))))))))))))))).))))).......................- ( -14.70, z-score = -1.16, R) >consensus UCGAAUAUCG__GUACGAAAAGGGAUUUGCAUAUUUAUUUUAGAGUGCUCCUUUUCAAUUUUAUUCAUAAUUUUAUUUUCGAAAUCUUUU ..(((((.........((((((((....((((............)))))))))))).....)))))........................ ( -9.09 = -7.77 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:35 2011