| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,525,628 – 1,525,764 |
| Length | 136 |
| Max. P | 0.998375 |
| Location | 1,525,628 – 1,525,764 |
|---|---|
| Length | 136 |
| Sequences | 3 |
| Columns | 136 |
| Reading direction | forward |
| Mean pairwise identity | 53.75 |
| Shannon entropy | 0.65357 |
| G+C content | 0.41871 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -16.26 |
| Energy contribution | -14.93 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.54 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.34 |
| SVM RNA-class probability | 0.998375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1525628 136 + 2517507 ACUUUGUACUUAUUUACAUUGGAUUGCUAAGCCACAAGGCUAGCAAGAUAACUAAGGGGGCGAAGUCAAGCCCUCCAACGUAAUCUUCCUAACUCCAGCAAUUAUACCUAAUCUUAAAAAAGGAAGACCCCUGGAC ....((((......))))..(((((((((.(((....)))))))))(((.((...((((((........))))))....)).))).)))....(((((........(((...........))).......))))). ( -33.36, z-score = -1.41, R) >droEre2.scaffold_4929 22320320 119 + 26641161 ACUUUGAUAUUAUUUUGAUAUAAUUGCUGAGCCACAAGGCCAG---------UAAUUGGGAGCAGU-AAUCUUCCCAACGUAAUCGUCAUA-CCUAAUUAACUGCAGUUCAUCUGUAAAAC------CCACUGGAC ....(((((((((.(((....((((((((.(((....))))))---------)))))(((((.(..-..))))))))).))))).))))..-((........(((((.....)))))....------.....)).. ( -28.83, z-score = -2.21, R) >droWil1.scaffold_177262 1151 111 - 5838 ACUAUUUGCUUAUU--AAUAC-ACCGUUGAGCCACAAGGCCAACC-GUUCAGCAAGAGGACGAAGUCAAGUCCUCCACCAUAAUCAUUUUG--AUAUACAACUCUA-CCCGCCGCUAC------------------ .....(((..((((--((...-((.((((.(((....))))))).-)).......((((((........)))))).............)))--)))..))).....-...........------------------ ( -22.70, z-score = -2.54, R) >consensus ACUUUGUACUUAUUU_AAUAC_AUUGCUGAGCCACAAGGCCAGC__G_U_A_UAAGAGGGCGAAGUCAAGCCCUCCAACGUAAUCAUCAUA_CAUAAACAACUAUA_CUCAUCUCUAAAA_______CC_CUGGAC .........................((((.(((....)))))))...........((((((........))))))............................................................. (-16.26 = -14.93 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:34 2011