| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,431,702 – 1,431,802 |
| Length | 100 |
| Max. P | 0.522226 |
| Location | 1,431,702 – 1,431,802 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 48.65 |
| Shannon entropy | 0.85316 |
| G+C content | 0.61007 |
| Mean single sequence MFE | -38.84 |
| Consensus MFE | -13.06 |
| Energy contribution | -11.78 |
| Covariance contribution | -1.28 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1431702 100 + 2517507 --------GCGAGCGCGCUCGCGACCCCGACAACGAGCUAACCUG---------CUCGUGCAUGUGGAGCAGCGUGUGGUGGGAUCGGUCGCACUUCUUGCAACGAUCACCGCUUCG --------.((((((((((.((..((.((...((((((......)---------)))))...)).)).)))))))))((((((((((...(((.....)))..))))).)))))))) ( -43.00, z-score = -1.49, R) >dp4.Unknown_group_20 36139 100 - 39967 GGCCGAUGUAGAUGGUGACGGUGCCGUCGCGACGAGGGCGGCU-----------------UACGUGGAGUAGCGUGUGGUGGUUCUUGCCACACACCCUGCACAGCCCGCCACUGCG .......((((.((((((((..((((((.(.....))))))).-----------------..)))...((((.(((((.((((....))))))))).))))......))))))))). ( -42.80, z-score = -0.30, R) >droPer1.super_3677 783 117 + 2475 GGCCGAUGUAGCUGUCGACUGUAUUCCCGAGGCUGAGCGGGCUGGACAGCAAAGCGCGGAUAUGUGGAGUAGCGUGUGGUGGUUCUUGCCGCACACCCUGCACAGCCCGCCACUGAG (((.(...(((((.(((..........))))))))..)((((((..........((((....))))..((((.(((((.((((....))))))))).)))).)))))))))...... ( -43.50, z-score = 0.49, R) >droMoj3.scaffold_6482 27777 87 + 2735782 -----------------ACGACGUCGCUGUUGGCGA-CGAGCUC------------CGGGCAGGUGCAGCAGAGUGUGAUGGCUCUGGCCACACGUUUUGCAUUUAGCCUUGCUACG -----------------....((((((.....))))-))(((..------------.(((((((((((...(((((((.((((....)))))))))))))))))).)))).)))... ( -36.70, z-score = -1.71, R) >droVir3.scaffold_13050 2644897 87 + 3426691 -----------------CCGAGAGUGUCGAGAGCUACGGGGAUC-------------ACGCAUGUGGAGUAAGAUGUGGUGGUCCUUUUUGCAAAUUUUGCACUUGGCUCCACUGCG -----------------.((..((((....((((((.(((((((-------------((((((.(......).)))).))))))))...((((.....))))).)))))))))).)) ( -28.20, z-score = -0.97, R) >consensus __________G_____GACGGCGUCGCCGAGACCGAGCGGGCUC____________CGGGCAUGUGGAGUAGCGUGUGGUGGUUCUUGCCGCACAUCUUGCACAGACCGCCACUGCG ...............................................................((((.((((.(((((.((((....))))))))).))))........)))).... (-13.06 = -11.78 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:33 2011