| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,428,442 – 1,428,556 |
| Length | 114 |
| Max. P | 0.884374 |
| Location | 1,428,442 – 1,428,556 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.08 |
| Shannon entropy | 0.50445 |
| G+C content | 0.53560 |
| Mean single sequence MFE | -39.68 |
| Consensus MFE | -22.44 |
| Energy contribution | -24.00 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1428442 114 + 2517507 GUUGUGCUCCUAUUACCCAGUCCGGAGGAGUAGGGCUUUUCUGUCCAAGUGUCGUGUAACCAUUUCUCCGCUGGCGGCAACGACCGUUCAACGAACGGU------GUGGCCUAAUAAACU ..........(((((.((((..(((((((((.((((......))))..((........)).))))))))))))).(((.((.(((((((...)))))))------)).)))))))).... ( -36.90, z-score = -1.34, R) >droSim1.chr3h_random 490766 120 - 1452968 GUCGUGCUCUUAUUACCCAGUCCGGAGGAGUAGGGGUUUCCCGUUCAAGUGUCAUGUAAACAUUUCUUCGCUGGUGGCAACGGCCGUUCGCUGAGCGGUCGUUGUGUGGCCUAAUAAAAU ((((...........(((((..(((((((((.(((....)))......((.........))))))))))))))).)(((((((((((((...))))))))))))).)))).......... ( -39.30, z-score = -1.57, R) >droSec1.super_71 101120 120 - 157554 GUCGUGCUCUUAUUACCCAGUCCGGAGGAGUAGGGGUUUCCUGUCCAAGUGCCAUGUAAACAUUUCUUCGCUGGUGGCAACGGCCGUUCGCUAAGCGGUCGUUGUGUGGCCUAAUAAAAU .....(((((((((.(((.....)).).)))))))))..........((.(((((.....((((........))))((((((((((((.....)))))))))))))))))))........ ( -36.70, z-score = -0.75, R) >droYak2.chrU 6889557 100 - 28119190 -------UCCUGGUACGCUGC-----GGAGUGGGGGCAUCCUGCCCAAGUGCAGCGUAGACAUAUUUCAUAUUUAGGCAACGGCCGGUCAUUGAACGGCCGUUGUUCGGGUU-------- -------.(((((((((((((-----(......((((.....))))...)))))))))..................((((((((((.........)))))))))))))))..-------- ( -44.70, z-score = -3.43, R) >droEre2.scaffold_4690 18042622 120 + 18748788 GUCGUGCUCCUAUUACCCAGUUCGGAGGAGUGGGGGUUUCCUGUCGAACUGUCGUGUAAACAUUUCCCCGCGGUUGACAACGGCCGUUCGCUGGACGGUCGUUGGGUGGCCUAAUUUAAG .....((..........(((((((((((((.......))))).))))))))..((....))........))(((((.(((((((((((.....)))))))))))..)))))......... ( -40.80, z-score = -0.31, R) >consensus GUCGUGCUCCUAUUACCCAGUCCGGAGGAGUAGGGGUUUCCUGUCCAAGUGUCGUGUAAACAUUUCUCCGCUGGUGGCAACGGCCGUUCGCUGAACGGUCGUUGUGUGGCCUAAUAAAAU .....(((((((((..((.....))...)))))))))..............................((((.....(((((((((((((...)))))))))))))))))........... (-22.44 = -24.00 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:31 2011