| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,362,920 – 1,362,992 |
| Length | 72 |
| Max. P | 0.711024 |
| Location | 1,362,920 – 1,362,992 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 58.93 |
| Shannon entropy | 0.72915 |
| G+C content | 0.34011 |
| Mean single sequence MFE | -14.74 |
| Consensus MFE | -0.80 |
| Energy contribution | -1.16 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.60 |
| Mean z-score | -3.29 |
| Structure conservation index | 0.05 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1362920 72 + 2517507 UUCAACUUCCUCUACAUUUAAGUGUUCGAGUCUAUACUCAUUACAUUCGCGUAACUCAUUGUUAAUCGCGAA--- .....................((((..((((....))))...))))(((((((((.....))))..))))).--- ( -13.00, z-score = -2.75, R) >droSim1.chrU 2907879 66 + 15797150 ------CUCUUCUGUAUUUAGAUGUUCUAAUCUAAAUACGUUAGAUUCUCUUAAAUCGUCAUCUAGGGCGUA--- ------.(((..(((((((((((......)))))))))))..)))...........((((......))))..--- ( -16.90, z-score = -4.39, R) >droSec1.super_585 3300 72 + 12446 UUCCCUUUCUUCUGUAUUUAGAUGUUCUAAUCUGAAUACGUUAGAUUCUCUUAACUCGUCGUCUAAGGCGUA--- .......(((..(((((((((((......)))))))))))..)))...........((((......))))..--- ( -17.90, z-score = -4.08, R) >droYak2.chr2L_random 2247437 71 + 4064425 -AUGUUCCCUUCUGUAUUCAAUUGUUCUAAUCUGAAUACGUUGGAUUCUCUUAACUCGUCGUCUAAGGCGUA--- -......((...((((((((..(......)..))))))))..))............((((......))))..--- ( -12.20, z-score = -2.00, R) >droMoj3.scaffold_6541 200162 68 - 2543558 --UAAUUUACUUAACAUUUAUAGAGUUCAAU---AACUC-UUGUACCUGC-UGACUUAUUGAAUUUAGUUGAAUG --............((((((..(((((((((---((.((-..((....))-.)).)))))))))))...)))))) ( -13.70, z-score = -3.25, R) >consensus __CAAUUUCUUCUGUAUUUAAAUGUUCUAAUCUAAAUACGUUAGAUUCUCUUAACUCGUCGUCUAAGGCGUA___ .........................((((((........))))))...........((((......))))..... ( -0.80 = -1.16 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:28 2011