Locus 8590

Sequence ID dm3.chr3RHet
Location 1,297,330 – 1,297,472
Length 142
Max. P 0.921867
window11796

overview

Window 6

Location 1,297,330 – 1,297,472
Length 142
Sequences 3
Columns 142
Reading direction forward
Mean pairwise identity 51.32
Shannon entropy 0.69000
G+C content 0.35531
Mean single sequence MFE -31.53
Consensus MFE -5.92
Energy contribution -5.60
Covariance contribution -0.32
Combinations/Pair 1.58
Mean z-score -2.88
Structure conservation index 0.19
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.29
SVM RNA-class probability 0.921867
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3RHet 1297330 142 + 2517507
AAAAGUGGAAAAAUUUAACUUCUCUUAGGCUAGGGACAUAUCAUCUUUCAAGAUAACUGUCCCAAACGAGCUUUUUUCGACCAUAUGUUCGGGUGAUUUUUGGCCGGAUAGUAUGGUCGUAAAAGAGUUCGAAGCUAAGACC
......................((((((.((.((((((....((((....))))...))))))...((((((((((((((((((((..((.(((.(....).))).))..))))))))).))))))))))).)))))))).. ( -52.00, z-score =  -5.61, R)
>droVir3.scaffold_12958 2431556 110 - 3547706
---AAUUACCAAAUUUAAUUUCUCCACCCUUCGUGAUAUAUCAUCUUUUAAAAUAA-----------------------AUCAUUUGUGAUUCCAAAUUUUGGCCUCCACAUAUGAUUGUUCACGAGUUCAAGCCA------
---..........................(((((((...................(-----------------------(((((.((((...(((.....)))....)))).))))))..))))))).........------ ( -16.30, z-score =  -1.95, R)
>droMoj3.scaffold_6500 358952 133 - 32352404
---UAUAUCGAAGUUUAGUUUUGCAACUCCUCGAGAAAUUGCUUCAUUCAAUAUUAGUGUGCCGGUAGAUUAUUUUAAAACUUUAUGUGAUCCUAAUGUCUGGCCACCUCAUGUAGUUGUUCAUGAGUUCAAACCU------
---......(((((....(((((........)))))....)))))...........(((.(((((..((((((..(((....))).)))))).......))))))))((((((........)))))).........------ ( -26.30, z-score =  -1.07, R)
>consensus
___AAUAACAAAAUUUAAUUUCUCAACCCCUCGAGAAAUAUCAUCUUUCAAAAUAA_UGU_CC____GA___UUUU___ACCAUAUGUGAUCCUAAUUUUUGGCCACCUCAUAUGGUUGUUCAAGAGUUCAAACCU______
..............................................................................(((((((((.....(((.....)))......)))))))))........................ ( -5.92 =  -5.60 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:23 2011