| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,244,410 – 6,244,520 |
| Length | 110 |
| Max. P | 0.717800 |
| Location | 6,244,410 – 6,244,520 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.34 |
| Shannon entropy | 0.50287 |
| G+C content | 0.42879 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -12.98 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6244410 110 + 23011544 GAACAACACUGACU--GCUUCUUUACUUGUUUCCGAGAACAGACAUUUCCAGUUUCCAGGACAAUAAGGACCGUUUU-GGUCCAUUAAAACGAGGGACUGA---UUUACAAUGCAG ............((--((.(((...((((....))))...)))......((((..(..(........(((((.....-))))).......)..)..)))).---........)))) ( -22.36, z-score = -0.40, R) >droEre2.scaffold_4929 15170919 109 + 26641161 UAUGAACACCGACU--GCCGCUCUUCUUGUUCCUG-GAACAGACCGUGCCAGUUUCCGGCACAAUAAGUACCGUUUU-GGUCCAUUAAAAGGAGGGACUGA---UUUACAAUGCAG ............((--((..((((((((((((...-)))).(((((((((.......)))))...(((......)))-))))......))))))))..((.---....))..)))) ( -24.70, z-score = 0.30, R) >droYak2.chr2L 15660116 111 - 22324452 GAACAACACUGACU--GCCUCUUUACUUGUUCCUUAGAACAGACGUUGCCAGUUUCCGGGACAAUGAGGACCGUUUUUGGUCCAUUAAAAAGAGGGACUGA---UUUACAAUGCAG ..............--.(((((((..((((((....)))))).(((((((........)).))))).((((((....)))))).....)))))))......---............ ( -28.80, z-score = -1.33, R) >droSec1.super_5 4315596 110 + 5866729 GAACAACACUGACU--GCUUCUUUACUUGUUCCCGGGAACAGACAUUUCCAGUUUCCGGGACAAUAAGGACCGUUUU-GGUCCAUUAAAACGAGGGACUGA---UUUACAAUGCAG ............((--((.((((((.((((.(((((((((...........)))))))))))))))))))..((.(.-.((((.((.....)).))))..)---...))...)))) ( -34.20, z-score = -3.35, R) >droSim1.chr2L 6042526 110 + 22036055 GAACAACACUGACU--GCUUCUUUACUUGUUCCCGGGAACAGACAUUUCCAGUUUCCGGGACAAUAAGGACCGUUUU-GGUCCAUUAAAACGAGGGACUGA---UUUACAAUGCAG ............((--((.((((((.((((.(((((((((...........)))))))))))))))))))..((.(.-.((((.((.....)).))))..)---...))...)))) ( -34.20, z-score = -3.35, R) >droPer1.super_5 144336 113 - 6813705 ---UGACAACGAAUUAGGUCCUUAAUAUGAUUCUUUAAGAACCUAAAGGUCCUUAAGGAAGCAAAAUAUCCCCAAGAAAACCACUUUCCAGAAGGCAUAAAACCUUUAAAAUGUUG ---...(((((....((((((((....((.(((((((((.(((....))).))))))))).))............((((.....))))...))))......))))......))))) ( -21.30, z-score = -1.61, R) >consensus GAACAACACUGACU__GCUUCUUUACUUGUUCCCGAGAACAGACAUUGCCAGUUUCCGGGACAAUAAGGACCGUUUU_GGUCCAUUAAAACGAGGGACUGA___UUUACAAUGCAG .................((.(((...(((((((.((((...(......)...)))).)))))))...(((((......)))))........))))).................... (-12.98 = -12.77 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:48 2011